Integration of stool microbiota, proteome and amino acid profiles to discriminate patients with adenomas and colorectal cancer

The influence of blood on the human gut microbiome

(2020) Thierry Chénard et al.   BMC MICROBIOLOGY

Early detection and follow‐up of colorectal neoplasia based on faecal volatile organic compounds

(2020) Sofie Bosch et al.   Colorectal Disease

Kindlin-2 links mechano-environment to proline synthesis and tumor growth

(2019) Ling Guo et al.   Nature Communications

-Omics biomarker identification pipeline for translational medicine

(2019) Laura Bravo-Merodio et al.   Journal of Translational Medicine

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

(2019) Andrew Maltez Thomas et al.   NATURE MEDICINE

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

(2019) Jakob Wirbel et al.   NATURE MEDICINE

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

(2019) Shinichi Yachida et al.   NATURE MEDICINE

Proteins in stool as biomarkers for non‐invasive detection of colorectal adenomas with high risk of progression

(2019) Malgorzata A Komor et al.   JOURNAL OF PATHOLOGY

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction

(2019) Laura Bravo-Merodio et al.   Scientific Data

The Proline Cycle As a Potential Cancer Therapy Target

(2018) John J. Tanner et al.   BIOCHEMISTRY

Expression profiling and intracellular localization studies of the novel Proline-, Histidine-, and Glycine-rich protein 1 suggest an essential role in gastro-intestinal epithelium and a potential clinical application in colorectal cancer diagnostics

(2018) Satu Oltedal et al.   BMC GASTROENTEROLOGY

Fecal Amino Acid Analysis Can Discriminate De Novo Treatment-Naïve Pediatric Inflammatory Bowel Disease From Controls

(2018) Sofie Bosch et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Alterations of the human gut Methanobrevibacter smithii as a biomarker for inflammatory bowel diseases

(2018) Shaghayegh Baradaran Ghavami et al.   MICROBIAL PATHOGENESIS

Dietary proline supplementation alters colonic luminal microbiota and bacterial metabolite composition between days 45 and 70 of pregnancy in Huanjiang mini-pigs

(2018) Yujiao Ji et al.   Journal of Animal Science and Biotechnology

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

(2018) Freddie Bray et al.   CA-A CANCER JOURNAL FOR CLINICIANS

The Potential of Gut Commensals in Reinforcing Intestinal Barrier Function and Alleviating Inflammation

(2018) Kaisa Hiippala et al.   Nutrients

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Collagen-derived proline promotes pancreatic ductal adenocarcinoma cell survival under nutrient limited conditions

(2017) Orianne Olivares et al.   Nature Communications

The strict anaerobic gut microbe Eubacterium hallii transforms the carcinogenic dietary heterocyclic amine 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP)

(2016) Mostafa I. Fekry et al.   Environmental Microbiology Reports

Targeting Phospholipid Metabolism in Cancer

(2016) Menglin Cheng et al.   Frontiers in Oncology

Accuracy of Fecal Immunochemical Tests for Colorectal Cancer

(2014) Jeffrey K. Lee et al.   ANNALS OF INTERNAL MEDICINE

Impact on colorectal cancer mortality of screening programmes based on the faecal immunochemical test

(2014) Manuel Zorzi et al.   GUT

Post-polypectomy colonoscopy surveillance: European Society of Gastrointestinal Endoscopy (ESGE) Guideline

(2013) Cesare Hassan et al.   ENDOSCOPY

Colorectal cancer

(2013) Hermann Brenner et al.   LANCET

Immunochemical Fecal Occult Blood Testing Is Equally Sensitive for Proximal and Distal Advanced Neoplasia

(2012) T R de Wijkerslooth et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Effects of Antimicrobial Peptides on Methanogenic Archaea

(2012) C. Bang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Cystine/Glutamate Antiporter System xc− in Health and Disease: From Molecular Mechanisms to Novel Therapeutic Opportunities

(2012) Jan Lewerenz et al.   ANTIOXIDANTS & REDOX SIGNALING

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

(2009) Thang V. Pham et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH