CapsNh-Kcr: Capsule network-based prediction of lysine crotonylation sites in human non-histone proteins

Histone crotonylation-centric gene regulation

(2021) Kun Li et al.   Epigenetics & Chromatin

iEnhancer-RF: Identifying enhancers and their strength by enhanced feature representation using random forest

(2021) Dae Yeong Lim et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Protein lysine crotonylation: past, present, perspective

(2021) Gaoyue Jiang et al.   Cell Death & Disease

A deep learning method for motor fault diagnosis based on a capsule network with gate-structure dilated convolutions

(2020) Yu Liang et al.   NEURAL COMPUTING & APPLICATIONS

Global crotonylome reveals CDYL-regulated RPA1 crotonylation in homologous recombination–mediated DNA repair

(2020) Huajing Yu et al.   Science Advances

CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

(2020) Wei Du et al.   BMC BIOINFORMATICS

i6mA-stack: A stacking ensemble-based computational prediction of DNA N6-methyladenine (6mA) sites in the Rosaceae genome

(2020) Jhabindra Khanal et al.   GENOMICS

Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks

(2020) Yan Zhu et al.   BRIEFINGS IN BIOINFORMATICS

Lysine crotonylation is involved in hepatocellular carcinoma progression

(2019) Junhu Wan et al.   BIOMEDICINE & PHARMACOTHERAPY

iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou’s 5-step rule

(2019) Sharaf Jameel Malebary et al.   PLoS One

Representation learning of genomic sequence motifs with convolutional neural networks

(2019) Peter K. Koo et al.   PLoS Computational Biology

HIV latency is reversed by ACSS2-driven histone crotonylation

(2018) Guochun Jiang et al.   JOURNAL OF CLINICAL INVESTIGATION

Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway

(2018) He Huang et al.   PROTEOMICS

Dynamics of Telomere Rejuvenation during Chemical Induction to Pluripotent Stem Cells

(2018) Haifeng Fu et al.   Stem Cell Reports

Capsule network for protein post-translational modification site prediction

(2018) Duolin Wang et al.   BIOINFORMATICS

A primer on deep learning in genomics

(2018) James Zou et al.   NATURE GENETICS

iKcr-PseEns: Identify lysine crotonylation sites in histone proteins with pseudo components and ensemble classifier

(2017) Wang-Ren Qiu et al.   GENOMICS

Prediction of lysine crotonylation sites by incorporating the composition of k -spaced amino acid pairs into Chou’s general PseAAC

(2017) Zhe Ju et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Ultradeep Lysine Crotonylome Reveals the Crotonylation Enhancement on Both Histones and Nonhistone Proteins by SAHA Treatment

(2017) Quan Wu et al.   JOURNAL OF PROTEOME RESEARCH

Large-Scale Identification of Protein Crotonylation Reveals Its Role in Multiple Cellular Functions

(2017) Wei Wei et al.   JOURNAL OF PROTEOME RESEARCH

Chromodomain Protein CDYL Acts as a Crotonyl-CoA Hydratase to Regulate Histone Crotonylation and Spermatogenesis

(2017) Shumeng Liu et al.   MOLECULAR CELL

MOF as an evolutionarily conserved histone crotonyltransferase and transcriptional activation by histone acetyltransferase-deficient and crotonyltransferase-competent CBP/p300

(2017) Xiaoguang Liu et al.   Cell Discovery

Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation

(2015) Benjamin R. Sabari et al.   MOLECULAR CELL

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS