Synaptic activity–dependent changes in the hippocampal palmitoylome

Local and substrate-specific S-palmitoylation determines subcellular localization of Gαo

(2022) Gonzalo P. Solis et al.   Nature Communications

Exploring the expression patterns of palmitoylating and de-palmitoylating enzymes in the mouse brain using the curated RNA-seq database BrainPalmSeq

(2022) Angela R Wild et al.   eLife

Substrate recruitment by zDHHC protein acyltransferases

(2021) Martin Ian P. Malgapo et al.   Open Biology

Memory engrams: Recalling the past and imagining the future

(2020) Sheena A. Josselyn et al.   SCIENCE

S-Palmitoylation of the sodium channel Nav1.6 regulates its activity and neuronal excitability

(2020) Yanling Pan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteome dynamics during homeostatic scaling in cultured neurons

(2020) Aline Ricarda Dörrbaum et al.   eLife

The palmitoyl acyltransferases ZDHHC5 and ZDHHC8 are uniquely present in DRG axons and control retrograde signaling via the Gp130/JAK/STAT3 pathway

(2020) Kaitlin M Collura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Activation of astrocytes in hippocampus decreases fear memory through adenosine A1 receptors

(2020) Yulan Li et al.   eLife

Role of Palmitoylation of Postsynaptic Proteins in Promoting Synaptic Plasticity

(2019) Lucas Matt et al.   Frontiers in Molecular Neuroscience

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

ApoA-I deficiency increases cortical amyloid deposition, cerebral amyloid angiopathy, cortical and hippocampal astrogliosis, and amyloid-associated astrocyte reactivity in APP/PS1 mice

(2019) Emily B. Button et al.   Alzheimers Research & Therapy

Regulation of dendrite morphology and excitatory synapse formation by zDHHC15

(2019) Bhavin S. Shah et al.   JOURNAL OF CELL SCIENCE

AMPAR Palmitoylation Tunes Synaptic Strength: Implications for Synaptic Plasticity and Disease

(2019) Kevin P. Koster   JOURNAL OF NEUROSCIENCE

Stress-induced changes in the S-palmitoylation and S-nitrosylation of synaptic proteins

(2019) Monika Zaręba-Kozioł et al.   MOLECULAR & CELLULAR PROTEOMICS

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

(2019) Frank Koopmans et al.   NEURON

KEGG Mapper for inferring cellular functions from protein sequences

(2019) Minoru Kanehisa et al.   PROTEIN SCIENCE

Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob

(2018) Ludger J.E. Goeminne et al.   Journal of Proteomics

BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

(2018) Florian Meier et al.   NATURE METHODS

Wnt Signaling Mediates LTP-Dependent Spine Plasticity and AMPAR Localization through Frizzled-7 Receptors

(2018) Faye McLeod et al.   Cell Reports

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Mouse Genome Database (MGD) 2019

(2018) Carol J Bult et al.   NUCLEIC ACIDS RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Neuronal competition: microcircuit mechanisms define the sparsity of the engram

(2018) Priyanka Rao-Ruiz et al.   CURRENT OPINION IN NEUROBIOLOGY

A proteomic analysis of contextual fear conditioned rats reveals dynamic modifications in neuron and oligodendrocyte protein expression in the dentate gyrus

(2017) Nicolas Houyoux et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Structural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase

(2017) Raffaello Verardi et al.   STRUCTURE

Global, site-specific analysis of neuronal protein S-acylation

(2017) Mark O. Collins et al.   Scientific Reports

PRG-1 Regulates Synaptic Plasticity via Intracellular PP2A/β1-Integrin Signaling

(2016) Xingfeng Liu et al.   DEVELOPMENTAL CELL

Activity-Dependent Palmitoylation Controls SynDIG1 Stability, Localization, and Function

(2016) I. Kaur et al.   JOURNAL OF NEUROSCIENCE

Identification of PSD-95 Depalmitoylating Enzymes

(2016) Norihiko Yokoi et al.   JOURNAL OF NEUROSCIENCE

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Hippocampal Somatostatin Interneurons Control the Size of Neuronal Memory Ensembles

(2016) Thomas Stefanelli et al.   NEURON

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Time-dependent changes in the mouse hippocampal synaptic membrane proteome after contextual fear conditioning

(2015) Priyanka Rao-Ruiz et al.   HIPPOCAMPUS

Coordination of Protein Phosphorylation and Dephosphorylation in Synaptic Plasticity

(2015) Kevin M. Woolfrey et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adult Hippocampal Neurogenesis Modulates Fear Learning through Associative and Nonassociative Mechanisms

(2015) D.-o. Seo et al.   JOURNAL OF NEUROSCIENCE

The Palmitoyl Acyltransferase DHHC2 Regulates Recycling Endosome Exocytosis and Synaptic Potentiation through Palmitoylation of AKAP79/150

(2015) K. M. Woolfrey et al.   JOURNAL OF NEUROSCIENCE

Neuronal circuits for fear and anxiety

(2015) Philip Tovote et al.   NATURE REVIEWS NEUROSCIENCE

The Physiology of Protein S-acylation

(2015) Luke H. Chamberlain et al.   PHYSIOLOGICAL REVIEWS

Activity-regulated trafficking of the palmitoyl-acyl transferase DHHC5

(2015) G. Stefano Brigidi et al.   Nature Communications

Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers

(2015) Shaun S. Sanders et al.   PLoS Computational Biology

Palmitoylation of δ-catenin by DHHC5 mediates activity-induced synapse plasticity

(2014) G Stefano Brigidi et al.   NATURE NEUROSCIENCE

Hippocampal Memory Traces Are Differentially Modulated by Experience, Time, and Adult Neurogenesis

(2014) Christine A. Denny et al.   NEURON

Palmitoylation of Gephyrin Controls Receptor Clustering and Plasticity of GABAergic Synapses

(2014) Borislav Dejanovic et al.   PLOS BIOLOGY

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

What does S-palmitoylation do to membrane proteins?

(2013) Sanja Blaskovic et al.   FEBS Journal

Local palmitoylation cycles define activity-regulated postsynaptic subdomains

(2013) Yuko Fukata et al.   JOURNAL OF CELL BIOLOGY

The contextual brain: implications for fear conditioning, extinction and psychopathology

(2013) Stephen Maren et al.   NATURE REVIEWS NEUROSCIENCE

Quantitative Label-Free Proteomics for Discovery of Biomarkers in Cerebrospinal Fluid: Assessment of Technical and Inter-Individual Variation

(2013) Richard J. Perrin et al.   PLoS One

Analysis of substrate specificity of human DHHC protein acyltransferases using a yeast expression system

(2012) Yusuke Ohno et al.   MOLECULAR BIOLOGY OF THE CELL

Optogenetic stimulation of a hippocampal engram activates fear memory recall

(2012) Xu Liu et al.   NATURE

Palmitoylation by DHHC5/8 Targets GRIP1 to Dendritic Endosomes to Regulate AMPA-R Trafficking

(2012) Gareth M. Thomas et al.   NEURON

Protein palmitoylation and subcellular trafficking

(2011) Clara Aicart-Ramos et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Reversible Palmitoylation Regulates Surface Stability of AMPA Receptors in the Nucleus Accumbens in Response to Cocaine In Vivo

(2011) Dustin K. Van Dolah et al.   BIOLOGICAL PSYCHIATRY

 -Pix Modulates Actin-Mediated Recruitment of Synaptic Vesicles to Synapses

(2011) Y. Sun et al.   JOURNAL OF NEUROSCIENCE

Palmitoylation of the SNAP25 Protein Family

(2010) Jennifer Greaves et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Site-specific analysis of proteinS-acylation by resin-assisted capture

(2010) Michael T. Forrester et al.   JOURNAL OF LIPID RESEARCH

Protein palmitoylation in neuronal development and synaptic plasticity

(2010) Yuko Fukata et al.   NATURE REVIEWS NEUROSCIENCE

Differential roles of GRIP1a and GRIP1b in AMPA receptor trafficking

(2010) Laura Jane Hanley et al.   NEUROSCIENCE LETTERS

AMPA receptors are exocytosed in stimulated spines and adjacent dendrites in a Ras-ERK-dependent manner during long-term potentiation

(2010) M. A. Patterson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synaptic PRG-1 Modulates Excitatory Transmission via Lipid Phosphate-Mediated Signaling

(2009) Thorsten Trimbuch et al.   CELL

Mobile DHHC palmitoylating enzyme mediates activity-sensitive synaptic targeting of PSD-95

(2009) Jun Noritake et al.   JOURNAL OF CELL BIOLOGY

AMPA Receptor Incorporation into Synapses during LTP: The Role of Lateral Movement and Exocytosis

(2009) Hiroshi Makino et al.   NEURON

A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function

(2008) J. D. Cahoy et al.   JOURNAL OF NEUROSCIENCE

Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation

(2008) Rujun Kang et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY