Monitoring mitochondrial translation by pulse SILAC

Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context

(2021) Marcel Morgenstern et al.   Cell Metabolism

Global mitochondrial protein import proteomics reveal distinct regulation by translation and translocation machinery

(2021) Jasmin Adriana Schäfer et al.   MOLECULAR CELL

Respiratory supercomplexes act as a platform for complex III ‐mediated maturation of human mitochondrial complexes I and IV

(2020) Margherita Protasoni et al.   EMBO JOURNAL

Pulse-chase SILAC–based analyses reveal selective oversynthesis and rapid turnover of mitochondrial protein components of respiratory complexes

(2020) Daniel F. Bogenhagen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Keeping the Proportions of Protein Complex Components in Check

(2020) James Christopher Taggart et al.   Cell Systems

Mitochondrial OXPHOS Biogenesis: Co-Regulation of Protein Synthesis, Import, and Assembly Pathways

(2020) Jia Xin Tang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Exploring the HeLa Dark Mitochondrial Proteome

(2020) Federica Marini et al.   Frontiers in Cell and Developmental Biology

Effective Method for Accurate and Sensitive Quantitation of Rapid Changes of Newly Synthesized Proteins

(2020) Ming Tong et al.   ANALYTICAL CHEMISTRY

Quantitative nascent proteome profiling by dual pulse labeling with O-propargyl-puromycin and stable isotope labeled amino acids

(2020) Junki Uchiyama et al.   JOURNAL OF BIOCHEMISTRY

Mitochondrial stress-dependent regulation of cellular protein synthesis

(2019) Ulrike Topf et al.   JOURNAL OF CELL SCIENCE

The NADH Dehydrogenase Nde1 Executes Cell Death after Integrating Signals from Metabolism and Proteostasis on the Mitochondrial Surface

(2019) SreeDivya Saladi et al.   MOLECULAR CELL

Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α

(2019) Kevin Klann et al.   MOLECULAR CELL

Assembly of mammalian oxidative phosphorylation complexes I–V and supercomplexes

(2018) Alba Signes et al.   Essays in Biochemistry

Proteome-wide identification of ubiquitin interactions using UbIA-MS

(2018) Xiaofei Zhang et al.   Nature Protocols

Revealing nascent proteomics in signaling pathways and cell differentiation

(2018) Craig M. Forester et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembly of the membrane domain of ATP synthase in human mitochondria

(2018) Jiuya He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ubiquitin-Dependent Degradation of Mitochondrial Proteins Regulates Energy Metabolism

(2018) Julie Lavie et al.   Cell Reports

The Multiple Levels of Mitonuclear Coregulation

(2018) R. Stefan Isaac et al.   Annual Review of Genetics

Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis

(2018) Koshi Imami et al.   MOLECULAR CELL

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Pathways to balance mitochondrial translation and protein import

(2018) Chantal Priesnitz et al.   GENES & DEVELOPMENT

The Growing Toolbox for Protein Synthesis Studies

(2017) Shintaro Iwasaki et al.   TRENDS IN BIOCHEMICAL SCIENCES

Plasticity of Mitochondrial Translation

(2017) Sven Dennerlein et al.   TRENDS IN CELL BIOLOGY

MR-1S Interacts with PET100 and PET117 in Module-Based Assembly of Human Cytochrome c Oxidase

(2017) Sara Vidoni et al.   Cell Reports

Improved Proteome and Phosphoproteome Analysis on a Cation Exchanger by a Combined Acid and Salt Gradient

(2016) Jun Adachi et al.   ANALYTICAL CHEMISTRY

Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein

(2016) Ricarda Richter-Dennerlein et al.   CELL

Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation

(2016) Erik McShane et al.   CELL

A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation

(2016) Jason D. Arroyo et al.   Cell Metabolism

Synchronized mitochondrial and cytosolic translation programs

(2016) Mary T. Couvillion et al.   NATURE

Structure of mammalian respiratory complex I

(2016) Jiapeng Zhu et al.   NATURE

Accessory subunits are integral for assembly and function of human mitochondrial complex I

(2016) David A. Stroud et al.   NATURE

Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses

(2016) Christoph T. Schanzenbächer et al.   NEURON

jPOSTrepo: an international standard data repository for proteomes

(2016) Shujiro Okuda et al.   NUCLEIC ACIDS RESEARCH

p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses

(2015) Sabine Hünten et al.   MOLECULAR & CELLULAR PROTEOMICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Nuclear gene mutations as the cause of mitochondrial complex III deficiency

(2015) Erika Fernández-Vizarra et al.   Frontiers in Genetics

Assembly factors monitor sequential hemylation of cytochromebto regulate mitochondrial translation

(2014) Markus Hildenbeutel et al.   JOURNAL OF CELL BIOLOGY

Quantitative Proteomic Analysis of Gene Regulation by miR-34a and miR-34c

(2014) Olivia A. Ebner et al.   PLoS One

Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation

(2013) R. Aviner et al.   GENES & DEVELOPMENT

Protein synthesis rate is the predominant regulator of protein expression during differentiation

(2013) A. R. Kristensen et al.   Molecular Systems Biology

QuaNCAT: quantitating proteome dynamics in primary cells

(2013) Andrew J M Howden et al.   NATURE METHODS

Ribosome profiling reveals features of normal and disease-associated mitochondrial translation

(2013) Koos Rooijers et al.   Nature Communications

The Cbp3–Cbp6 complex coordinates cytochromebsynthesis withbc1complex assembly in yeast mitochondria

(2012) Steffi Gruschke et al.   JOURNAL OF CELL BIOLOGY

Selective enrichment of newly synthesized proteins for quantitative secretome analysis

(2012) Katrin Eichelbaum et al.   NATURE BIOTECHNOLOGY

Cbp3–Cbp6 interacts with the yeast mitochondrial ribosomal tunnel exit and promotes cytochromebsynthesis and assembly

(2011) Steffi Gruschke et al.   JOURNAL OF CELL BIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Unbiased Quantitation of Escherichia coli Membrane Proteome Using Phase Transfer Surfactants

(2009) Takeshi Masuda et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mapping Gene Associations in Human Mitochondria using Clinical Disease Phenotypes

(2009) Curt Scharfe et al.   PLoS Computational Biology

Phase Transfer Surfactant-Aided Trypsin Digestion for Membrane Proteome Analysis

(2008) Takeshi Masuda et al.   JOURNAL OF PROTEOME RESEARCH

Turnover of the Human Proteome: Determination of Protein Intracellular Stability by Dynamic SILAC

(2008) Mary K. Doherty et al.   JOURNAL OF PROTEOME RESEARCH

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Global analysis of cellular protein translation by pulsed SILAC

(2008) Björn Schwanhäusser et al.   PROTEOMICS