Incorporating higher order network structures to improve miRNA–disease association prediction based on functional modularity

Prediction of potential miRNA–disease associations based on stacked autoencoder

(2022) Chun-Chun Wang et al.   BRIEFINGS IN BIOINFORMATICS

Attention-based Knowledge Graph Representation Learning for Predicting Drug-drug Interactions

(2022) Xiaorui Su et al.   BRIEFINGS IN BIOINFORMATICS

Identification of key regulators associated with colon cancer prognosis and pathogenesis

(2021) Narges Toolabi et al.   Journal of Cell Communication and Signaling

Circulating serum miR-200c and miR-34a-5p as diagnostic biomarkers for endometriosis

(2021) Sema Misir et al.   Journal of Gynecology Obstetrics and Human Reproduction

HINGRL: predicting drug–disease associations with graph representation learning on heterogeneous information networks

(2021) Bo-Wei Zhao et al.   BRIEFINGS IN BIOINFORMATICS

LncRNA PKMYT1AR promotes cancer stem cell maintenance in non-small cell lung cancer via activating Wnt signaling pathway

(2021) Yaomei He et al.   Molecular Cancer

Network medicine for disease module identification and drug repurposing with the NeDRex platform

(2021) Sepideh Sadegh et al.   Nature Communications

A Fast Fuzzy Clustering Algorithm for Complex Networks via a Generalized Momentum Method

(2021) Lun Hu et al.   IEEE TRANSACTIONS ON FUZZY SYSTEMS

Predicting miRNA-disease association from heterogeneous information network with GraRep embedding model

(2020) Bo-Ya Ji et al.   Scientific Reports

HiSCF: leveraging higher-order structures for clustering analysis in biological networks

(2020) Lun Hu et al.   BIOINFORMATICS

Exploiting higher-order patterns for community detection in attributed graphs

(2020) Lun Hu et al.   INTEGRATED COMPUTER-AIDED ENGINEERING

LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

(2019) Lei Wang et al.   PLoS Computational Biology

Adaptive boosting-based computational model for predicting potential miRNA-disease associations

(2019) Yan Zhao et al.   BIOINFORMATICS

Bipartite Heterogeneous Network Method Based on Co-neighbor for MiRNA-Disease Association Prediction

(2019) Min Chen et al.   Frontiers in Genetics

miR-146a promoted breast cancer proliferation and invasion by regulating NM23-H1

(2019) Jun Chen et al.   JOURNAL OF BIOCHEMISTRY

Neural inductive matrix completion with graph convolutional networks for miRNA-disease association prediction

(2019) Jin Li et al.   BIOINFORMATICS

A novel computational model based on super-disease and miRNA for potential miRNA–disease association prediction

(2017) Xing Chen et al.   Molecular BioSystems

The Spacey Random Walk: A Stochastic Process for Higher-Order Data

(2017) Austin R. Benson et al.   SIAM REVIEW

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

Higher-order organization of complex networks

(2016) A. R. Benson et al.   SCIENCE

MiR-199a-5p and miR-375 affect colon cancer cell sensitivity to cetuximab by targeting PHLPP1

(2015) Paula Mussnich et al.   EXPERT OPINION ON THERAPEUTIC TARGETS

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Prognostic and predictive value of a microRNA signature in stage II colon cancer: a microRNA expression analysis

(2013) Jia-Xing Zhang et al.   LANCET ONCOLOGY

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Hierarchical Information Clustering by Means of Topologically Embedded Graphs

(2012) Won-Min Song et al.   PLoS One

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

SnapShot: Network Motifs

(2010) Oren Shoval et al.   CELL

A Brief Review on the Mechanisms of miRNA Regulation

(2010) Yimei Cai et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH