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Automatic Text Summarization of Biomedical Text Data: A Systematic Review

期刊

INFORMATION
卷 13, 期 8, 页码 -

出版社

MDPI
DOI: 10.3390/info13080393

关键词

medical documents; text summarization; language processing; intrinsic evaluation

资金

  1. Basque Government [IT1536-22]

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In recent years, the advancement of technology has led to an increase in text data from various sources. In the biomedical field, text information has also experienced rapid growth, and automatic text summarization systems are crucial in optimizing physicians' time and identifying relevant information. This paper presents a systematic review of recent research on text summarization for biomedical data, focusing on the methods used, types of input data, areas of application, and evaluation metrics employed. The study found that Transformer-based approaches have been implemented more frequently in recent years compared to previous studies.
In recent years, the evolution of technology has led to an increase in text data obtained from many sources. In the biomedical domain, text information has also evidenced this accelerated growth, and automatic text summarization systems play an essential role in optimizing physicians' time resources and identifying relevant information. In this paper, we present a systematic review in recent research of text summarization for biomedical textual data, focusing mainly on the methods employed, type of input data text, areas of application, and evaluation metrics used to assess systems. The survey was limited to the period between 1st January 2014 and 15th March 2022. The data collected was obtained from WoS, IEEE, and ACM digital libraries, while the search strategies were developed with the help of experts in NLP techniques and previous systematic reviews. The four phases of a systematic review by PRISMA methodology were conducted, and five summarization factors were determined to assess the studies included: Input, Purpose, Output, Method, and Evaluation metric. Results showed that 3.5% of 801 studies met the inclusion criteria. Moreover, Single-document, Biomedical Literature, Generic, and Extractive summarization proved to be the most common approaches employed, while techniques based on Machine Learning were performed in 16 studies and Rouge (Recall-Oriented Understudy for Gisting Evaluation) was reported as the evaluation metric in 26 studies. This review found that in recent years, more transformer-based methodologies for summarization purposes have been implemented compared to a previous survey. Additionally, there are still some challenges in text summarization in different domains, especially in the biomedical field in terms of demand for further research.

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