Influence of Pleistocene climate fluctuations on the demographic history and distribution of the critically endangered Chinese pangolin (Manis pentadactyla)

Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda

(2021) Xuanmin Guang et al.   Science Bulletin

Bayesian Skyline Plots disagree with range size changes based on Species Distribution Models for Holarctic birds

(2021) Eleanor F. Miller et al.   MOLECULAR ECOLOGY

Genomic Consequences of Population Decline in Critically Endangered Pangolins and Their Demographic Histories

(2020) Jing-Yang Hu et al.   National Science Review

Discordant evolution of mitochondrial and nuclear yeast genomes at population level

(2020) Matteo De Chiara et al.   BMC BIOLOGY

The roles of climate, geography and natural selection as drivers of genetic and phenotypic differentiation in a widespread amphibian Hyla annectans (Anura: Hylidae)

(2020) Shichao Wei et al.   MOLECULAR ECOLOGY

Accurate, scalable and integrative haplotype estimation

(2019) Olivier Delaneau et al.   Nature Communications

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

SDMtoolbox 2.0: the next generation Python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2017) Jason L. Brown et al.   PeerJ

Pangolin genomes and the evolution of mammalian scales and immunity

(2016) Siew Woh Choo et al.   GENOME RESEARCH

A note on captive breeding and reproductive parameters of the Chinese pangolin, Manis pentadactyla Linnaeus, 1758

(2016) Shibao Wu et al.   ZooKeys

Exploring population size changes using SNP frequency spectra

(2015) Xiaoming Liu et al.   NATURE GENETICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Warning times for species extinctions due to climate change

(2014) Jessica C. Stanton et al.   GLOBAL CHANGE BIOLOGY

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity forMaxentecological niche models

(2014) Robert Muscarella et al.   Methods in Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

The Threat of Disease Increases as Species Move Toward Extinction

(2013) MATTHEW J. HEARD et al.   CONSERVATION BIOLOGY

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

(2013) Rasmus Heller et al.   PLoS One

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Geological events play a larger role than Pleistocene climatic fluctuations in driving the genetic structure ofQuasipaa boulengeri(Anura: Dicroglossidae)

(2012) Fang Yan et al.   MOLECULAR ECOLOGY

The impact of global climate change on genetic diversity within populations and species

(2012) Steffen U. Pauls et al.   MOLECULAR ECOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY