Localization of Epigenetic Markers in Leishmania Chromatin

Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes

(2020) Amelie J. Kraus et al.   Nature Communications

Efficient low-cost chromatin profiling with CUT&Tag

(2020) Hatice S. Kaya-Okur et al.   Nature Protocols

CUT&Tag for efficient epigenomic profiling of small samples and single cells

(2019) Hatice S. Kaya-Okur et al.   Nature Communications

Epigenetic Regulation of Transcription in Trypanosomatid Protozoa

(2018) Santiago Martinez-Calvillo et al.   CURRENT GENOMICS

Genome organization and DNA accessibility control antigenic variation in trypanosomes

(2018) Laura S. M. Müller et al.   NATURE

Post-translational Modifications of Trypanosoma cruzi Canonical and Variant Histones

(2017) Gisele F. A. Picchi et al.   JOURNAL OF PROTEOME RESEARCH

HAT2 mediates histone H4K4 acetylation and affects micrococcal nuclease sensitivity of chromatin in Leishmania donovani

(2017) Pravin K. Jha et al.   PLoS One

Cell cycle stage-specific transcriptional activation of cyclins mediated by HAT2-dependent H4K10 acetylation of promoters in Leishmania donovani

(2017) Udita Chandra et al.   PLoS Pathogens

Gene expression in Kinetoplastids

(2016) CE Clayton   CURRENT OPINION IN MICROBIOLOGY

Transcriptionally Driven DNA Replication Program of the Human Parasite Leishmania major

(2016) Rodrigo Lombraña et al.   Cell Reports

Base J and H3.V Regulate Transcriptional Termination in Trypanosoma brucei

(2016) Danae Schulz et al.   PLoS Genetics

The epigenome of Trypanosoma brucei: A regulatory interface to an unconventional transcriptional machine

(2014) Johannes P. Maree et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Resolving the complexity of the human genome using single-molecule sequencing

(2014) Mark J. P. Chaisson et al.   NATURE

Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei

(2014) D. Reynolds et al.   NUCLEIC ACIDS RESEARCH

Determinants of disease phenotype in trypanosomatid parasites

(2014) Laura-Isobel McCall et al.   TRENDS IN PARASITOLOGY

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Kinetoplastid-specific histone variant functions are conserved in Leishmania major

(2013) Britta A. Anderson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Glucosylated Hydroxymethyluracil, DNA Base J, Prevents Transcriptional Readthrough in Leishmania

(2012) Henri G.A.M. van Luenen et al.   CELL

The CENP-A nucleosome: a dynamic structure and role at the centromere

(2012) Delphine Quénet et al.   CHROMOSOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

DOT1A-dependent H3K76 methylation is required for replication regulation in Trypanosoma brucei

(2012) Alwine Gassen et al.   NUCLEIC ACIDS RESEARCH

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Epigenetic Regulation of Polymerase II Transcription Initiation in Trypanosoma cruzi: Modulation of Nucleosome Abundance, Histone Modification, and Polymerase Occupancy by O-Linked Thymine DNA Glucosylation

(2011) Dilrukshi Ekanayake et al.   EUKARYOTIC CELL

Histone H4 lysine 14 acetylation in Leishmania donovani is mediated by the MYST-family protein HAT4

(2011) D. Kumar et al.   MICROBIOLOGY-SGM

Epigenetic Regulation of Transcription and Virulence in Trypanosoma cruzi by O-Linked Thymine Glucosylation of DNA

(2011) D. K. Ekanayake et al.   MOLECULAR AND CELLULAR BIOLOGY

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

(2010) Thomas D. Otto et al.   BIOINFORMATICS

Histone H3 trimethylated at lysine 4 is enriched at probable transcription start sites in Trypanosoma brucei

(2010) Jessica R. Wright et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei

(2010) Laura J. Cliffe et al.   NUCLEIC ACIDS RESEARCH

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

Gene organization and sequence analyses of transfer RNA genes in Trypanosomatid parasites

(2009) Norma E Padilla-Mejía et al.   BMC GENOMICS

Histone acetylations mark origins of polycistronic transcription in Leishmania major

(2009) Sean Thomas et al.   BMC GENOMICS

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

(2009) T. N. Siegel et al.   GENES & DEVELOPMENT

Trypanosome H2Bv replaces H2B in nucleosomes enriched for H3 K4 and K76 trimethylation

(2008) Veena Mandava et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DOT1L/KMT4 Recruitment and H3K79 Methylation Are Ubiquitously Coupled with Gene Transcription in Mammalian Cells

(2008) D. J. Steger et al.   MOLECULAR AND CELLULAR BIOLOGY