High-Altitude Stress Orchestrates mRNA Expression and Alternative Splicing of Ovarian Follicle Development Genes in Tibetan Sheep

Targeting CLK4 inhibits the metastasis and progression of breast cancer by inactivating TGF-β pathway

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Aberrant cytoplasmic intron retention is a blueprint for RNA binding protein mislocalization in amyotrophic lateral sclerosis

(2021) Giulia E Tyzack et al.   BRAIN

Genome-wide comparative analyses reveal selection signatures underlying adaptation and production in Tibetan and Poll Dorset sheep

(2021) Yingyue Zhang et al.   Scientific Reports

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Functional analyses unveil the involvement of moso bamboo (Phyllostachys edulis) group I and II NIN-LIKE PROTEINS in nitrate signaling regulation

(2021) Zezhong Lin et al.   PLANT SCIENCE

Mutant U2AF1-induced differential alternative splicing causes an oxidative stress in bone marrow stromal cells

(2021) Zhe Liu et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

ADAMTS-1: a novel target gene of an estrogen-induced transcription factor, EGR1, critical for embryo implantation in the mouse uterus

(2021) Mira Park et al.   Cell and Bioscience

Identifying the heat resistant genes by multi-tissue transcriptome sequencing analysis in Turpan Black sheep

(2021) Aerman Haire et al.   THERIOGENOLOGY

Splicing Factor DDX23, Transcriptionally Activated by E2F1, Promotes Ovarian Cancer Progression by Regulating FOXM1

(2021) Chen Zhao et al.   Frontiers in Oncology

The full-length transcriptome of Spartina alterniflora reveals the complexity of high salt tolerance in monocotyledonous halophyte

(2020) Wenbin Ye et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Characterization of Alternative Splicing Events and Their Responses to Cold Stress in Tilapia

(2020) Bi Jun Li et al.   Frontiers in Genetics

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Acetylation of PHF5A Modulates Stress Responses and Colorectal Carcinogenesis through Alternative Splicing-Mediated Upregulation of KDM3A

(2019) Zhe Wang et al.   MOLECULAR CELL

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

(2018) Kisun Pokharel et al.   BMC GENOMICS

Genome -wide transcriptome profiling in ovaries of small-tail Han sheep during the follicular and luteal phases of the oestrous cycle

(2018) Han Wang et al.   ANIMAL REPRODUCTION SCIENCE

FOS, a Critical Downstream Mediator of PGR and EGF-signaling Necessary for Ovulatory Prostaglandins in the Human Ovary

(2018) Yohan Choi et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Genomic Reconstruction of the History of Native Sheep Reveals the Peopling Patterns of Nomads and the Expansion of Early Pastoralism in East Asia

(2017) Yong-Xin Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Alternative splicing as a regulator of development and tissue identity

(2017) Francisco E. Baralle et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

FSH stimulation of anestrous cats improves oocyte quality and development of parthenogenetic embryos

(2017) Daniel Veraguas et al.   THERIOGENOLOGY

TACO produces robust multisample transcriptome assemblies from RNA-seq

(2016) Yashar S Niknafs et al.   NATURE METHODS

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Altered gene expression profile in ovarian follicle in rats treated with indomethacin and RU486

(2015) Kenjiro Tsubota et al.   JOURNAL OF TOXICOLOGICAL SCIENCES

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipopolysaccharide in ovarian follicular fluid influences the steroid production in large follicles of dairy cows

(2013) Fumie Magata et al.   ANIMAL REPRODUCTION SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Blood and lymphatic vasculature in the ovary: development, function and disease

(2013) H.M. Brown et al.   HUMAN REPRODUCTION UPDATE

Cytokines in ovarian folliculogenesis, oocyte maturation and luteinisation

(2013) Sarah L Field et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Fertility in a high-altitude environment is compromised by luteal dysfunction: the relative roles of hypoxia and oxidative stress

(2013) Víctor H Parraguez et al.   Reproductive Biology and Endocrinology

Structure, function and regulation of gonadotropin receptors – A perspective

(2012) K.M.J. Menon et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Development and Hormonal Regulation of the Ovarian Lymphatic Vasculature

(2010) Hannah M. Brown et al.   ENDOCRINOLOGY

Hypoxia-Inducible Factors and the Response to Hypoxic Stress

(2010) Amar J. Majmundar et al.   MOLECULAR CELL

Expression of Tumor Necrosis Factor Alpha-Induced Protein 6 Messenger RNA in Porcine Preovulatory Ovarian Follicles

(2009) Eva NAGYOVA et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Regulation of Bovine Tumor Necrosis Factor-α-Induced Protein 6 in Ovarian Follicles during the Ovulatory Process and Promoter Activation in Granulosa Cells

(2008) Khampoune Sayasith et al.   ENDOCRINOLOGY