Inferring average generation via division-linked labeling

Variation in cancer risk among tissues can be explained by the number of stem cell divisions

(2015) C. Tomasetti et al.   SCIENCE

Mosaic analysis and tumor induction in zebrafish by microsatellite instability-mediated stochastic gene expression

(2014) W. Koole et al.   Disease Models & Mechanisms

Stretched cell cycle model for proliferating lymphocytes

(2014) M. R. Dowling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antigen affinity, costimulation, and cytokine inputs sum linearly to amplify T cell expansion

(2014) J. M. Marchingo et al.   SCIENCE

Determining Lineage Pathways from Cellular Barcoding Experiments

(2014) Leïla Perié et al.   Cell Reports

Quantifying the Length and Variance of the Eukaryotic Cell Cycle Phases by a Stochastic Model and Dual Nucleoside Pulse Labelling

(2014) Tom Serge Weber et al.   PLoS Computational Biology

Continuous Clonal Labeling Reveals Small Numbers of Functional Stem Cells in Intestinal Crypts and Adenomas

(2013) Sarah Kozar et al.   Cell Stem Cell

Quantifying T lymphocyte turnover

(2013) Rob J. De Boer et al.   JOURNAL OF THEORETICAL BIOLOGY

Diverse and heritable lineage imprinting of early haematopoietic progenitors

(2013) Shalin H. Naik et al.   NATURE

A versatile microsatellite instability reporter system in human cells

(2013) Wouter Koole et al.   NUCLEIC ACIDS RESEARCH

Disparate Individual Fates Compose Robust CD8+ T Cell Immunity

(2013) V. R. Buchholz et al.   SCIENCE

Heterogeneous Differentiation Patterns of Individual CD8+ T Cells

(2013) C. Gerlach et al.   SCIENCE

Tracking Proliferative History in Lymphocyte Development with Cre-Mediated Sister Chromatid Recombination

(2013) Baojun Zhang et al.   PLoS Genetics

Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos

(2012) C. A. Giurumescu et al.   DEVELOPMENT

A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress

(2012) Julia L. Richards et al.   DEVELOPMENTAL BIOLOGY

New and improved methods for measuring lymphocyte proliferation in vitro and in vivo using CFSE-like fluorescent dyes

(2012) Benjamin J.C. Quah et al.   JOURNAL OF IMMUNOLOGICAL METHODS

A direct characterization of human mutation based on microsatellites

(2012) James X Sun et al.   NATURE GENETICS

Variable Clonal Repopulation Dynamics Influence Chemotherapy Response in Colorectal Cancer

(2012) A. Kreso et al.   SCIENCE

Activation-Induced B Cell Fates Are Selected by Intracellular Stochastic Competition

(2012) K. R. Duffy et al.   SCIENCE

Mosaic Analysis with Double Markers Reveals Tumor Cell of Origin in Glioma

(2011) Chong Liu et al.   CELL

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

(2011) Rong Lu et al.   NATURE BIOTECHNOLOGY

Decoding cell lineage from acquired mutations using arbitrary deep sequencing

(2011) Cheryl A Carlson et al.   NATURE METHODS

Colon Stem Cell and Crypt Dynamics Exposed by Cell Lineage Reconstruction

(2011) Yitzhak Reizel et al.   PLoS Genetics

Intestinal Crypt Homeostasis Results from Neutral Competition between Symmetrically Dividing Lgr5 Stem Cells

(2010) Hugo J. Snippert et al.   CELL

Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions

(2010) F. L. A. F. Gomes et al.   DEVELOPMENT

Nucleosome-Depleted Regions in Cell-Cycle-Regulated Promoters Ensure Reliable Gene Expression in Every Cell Cycle

(2010) Lu Bai et al.   DEVELOPMENTAL CELL

A minimum of two distinct heritable factors are required to explain correlation structures in proliferating lymphocytes

(2010) J. F. Markham et al.   Journal of the Royal Society Interface

Probing the mitotic history and developmental stage of hematopoietic cells using single telomere length analysis (STELA)

(2009) M. Hills et al.   BLOOD

A single-cell pedigree analysis of alternative stochastic lymphocyte fates

(2009) E. D. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualizing Spatiotemporal Dynamics of Multicellular Cell-Cycle Progression

(2008) Asako Sakaue-Sawano et al.   CELL

On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics

(2008) Ken R. Duffy et al.   JOURNAL OF MATHEMATICAL BIOLOGY

A mitotic recombination system for mouse chromosome 17

(2008) L. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Cell Depth from Somatic Mutations

(2008) Adam Wasserstrom et al.   PLoS Computational Biology