Generalism drives abundance: A computational causal discovery approach

Fingerprints of High-Dimensional Coexistence in Complex Ecosystems

(2021) Matthieu Barbier et al.   Physical Review X

The influence of biogeographical and evolutionary histories on morphological trait‐matching and resource specialization in mutualistic hummingbird‐plant networks

(2021) Bo Dalsgaard et al.   FUNCTIONAL ECOLOGY

Habitat loss and range shifts contribute to ecological generalization among reef fishes

(2021) Rick D. Stuart-Smith et al.   Nature Ecology & Evolution

Specialization of plant–pollinator interactions increases with temperature at Mt. Kilimanjaro

(2020) Alice Classen et al.   Ecology and Evolution

Diversity and coexistence are influenced by time‐dependent species interactions in a predator–prey system

(2020) Canan Karakoç et al.   ECOLOGY LETTERS

Forecasting unprecedented ecological fluctuations

(2020) Samuel R. Bray et al.   PLoS Computational Biology

Temperature is a dominant driver of distinct annual seasonality of leaf litter production of equatorial tropical rain forests

(2020) Kanehiro Kitayama et al.   JOURNAL OF ECOLOGY

Susceptible host availability modulates climate effects on dengue dynamics

(2020) Nicole Nova et al.   ECOLOGY LETTERS

Beware greedy algorithms

(2019) Benno I. Simmons et al.   JOURNAL OF ANIMAL ECOLOGY

Beware z ‐scores

(2019) Chuliang Song et al.   JOURNAL OF ANIMAL ECOLOGY

Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks

(2019) Benno I. Simmons et al.   OIKOS

Causal analysis in control–impact ecological studies with observational data

(2019) Ashley E. Larsen et al.   Methods in Ecology and Evolution

Mutualistic networks: moving closer to a predictive theory

(2019) Fernanda S. Valdovinos   ECOLOGY LETTERS

Ordered quantile normalization: a semiparametric transformation built for the cross-validation era

(2019) Ryan A. Peterson et al.   JOURNAL OF APPLIED STATISTICS

Inferring causation from time series in Earth system sciences

(2019) Jakob Runge et al.   Nature Communications

Breaking the Spell of Nestedness: The Entropic Origin of Nestedness in Mutualistic Systems

(2019) Clàudia Payrató-Borràs et al.   Physical Review X

Amazon deforestation drives malaria transmission, and malaria burden reduces forest clearing

(2019) Andrew J. MacDonald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Learning stable and predictive structures in kinetic systems

(2019) Niklas Pfister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergent niche structuring leads to increased differences from neutrality in species abundance distributions

(2018) Rosalyn C. Rael et al.   ECOLOGY

Fluctuating interaction network and time-varying stability of a natural fish community

(2018) Masayuki Ushio et al.   NATURE

Incorporating measurement error in testing for changes in biodiversity

(2018) Norman W. H. Mason et al.   Methods in Ecology and Evolution

TerraClimate, a high-resolution global dataset of monthly climate and climatic water balance from 1958–2015

(2018) John T. Abatzoglou et al.   Scientific Data

Motifs in bipartite ecological networks: uncovering indirect interactions

(2018) Benno I. Simmons et al.   OIKOS

Missing the people for the trees: Identifying coupled natural-human system feedbacks driving the ecology of Lyme disease

(2018) Andrew J. MacDonald et al.   JOURNAL OF APPLIED ECOLOGY

Why are some plant-pollinator networks more nested than others?

(2017) Chuliang Song et al.   JOURNAL OF ANIMAL ECOLOGY

Kernel-based tests for joint independence

(2017) Niklas Pfister et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Methods for causal inference from gene perturbation experiments and validation

(2016) Nicolai Meinshausen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical mechanics of ecological systems: Neutral theory and beyond

(2016) Sandro Azaele et al.   REVIEWS OF MODERN PHYSICS

Synthetic datasets and community tools for the rapid testing of ecological hypotheses

(2015) Timothée Poisot et al.   ECOGRAPHY

Abundance and generalisation in mutualistic networks: solving the chicken-and-egg dilemma

(2015) Hugo Fort et al.   ECOLOGY LETTERS

Phylogenetic relatedness and the determinants of competitive outcomes

(2014) Oscar Godoy et al.   ECOLOGY LETTERS

REVIEW: On the species abundance distribution in applied ecology and biodiversity management

(2014) Thomas J. Matthews et al.   JOURNAL OF APPLIED ECOLOGY

Systematic global assessment of reef fish communities by the Reef Life Survey program

(2014) Graham J Edgar et al.   Scientific Data

Big data and the future of ecology

(2013) Stephanie E Hampton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Emergence of structural and dynamical properties of ecological mutualistic networks

(2013) Samir Suweis et al.   NATURE

Abundant equals nested

(2013) Colin Fontaine   NATURE

Information-geometric approach to inferring causal directions

(2012) Dominik Janzing et al.   ARTIFICIAL INTELLIGENCE

Is there an ecological basis for species abundance distributions?

(2012) Jian D. L. Yen et al.   OECOLOGIA

Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes

(2012) P. Jeraldo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Causality in Complex Ecosystems

(2012) G. Sugihara et al.   SCIENCE

Causality of the Relationship between Geographic Distribution and Species Abundance

(2010) Michael Krabbe Borregaard et al.   QUARTERLY REVIEW OF BIOLOGY

Structure and Dynamics of Ecological Networks

(2010) J. Bascompte   SCIENCE

The importance of niches for the maintenance of species diversity

(2009) Jonathan M. Levine et al.   NATURE

Species abundance distribution results from a spatial analogy of central limit theorem

(2009) A. L. Sizling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What drives community dynamics?

(2009) C. M. Mutshinda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES