Allele‐specific expression and chromatin accessibility contribute to heterosis in tea plants ( Camellia sinensis )
出版年份 2022 全文链接
标题
Allele‐specific expression and chromatin accessibility contribute to heterosis in tea plants (
Camellia sinensis
)
作者
关键词
-
出版物
PLANT JOURNAL
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2022-10-12
DOI
10.1111/tpj.16004
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Architecture and Dynamics of the Wounding-Induced Gene Regulatory Network During the Oolong Tea Manufacturing Process (Camellia sinensis)
- (2022) Yucheng Zheng et al. Frontiers in Plant Science
- Changes in Non-Volatile and Volatile Metabolites Associated with Heterosis in Tea Plants (Camellia sinensis)
- (2022) Pengjie Wang et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Genomes of single‐ and double‐petal jasmines ( Jasminum sambac ) provide insights into their divergence time and structural variations
- (2022) Pengjie Wang et al. PLANT BIOTECHNOLOGY JOURNAL
- Arabidopsis cryptochrome 2 forms photobodies with TCP22 under blue light and regulates the circadian clock
- (2022) Weiliang Mo et al. Nature Communications
- How does tea (Camellia sinensis) produce specialized metabolites which determine its unique quality and function: a review
- (2021) Yinyin Liao et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- Biological pathway expression complementation contributes to biomass heterosis in Arabidopsis
- (2021) Wenwen Liu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic basis of high aroma and stress tolerance in the oolong tea cultivar genome
- (2021) Pengjie Wang et al. Horticulture Research
- Chromatin accessibility and translational landscapes of tea plants under chilling stress
- (2021) Pengjie Wang et al. Horticulture Research
- Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis
- (2021) Xingtan Zhang et al. NATURE GENETICS
- Insight into the cellular and physiological regulatory modulations of Class‐I TCP9 to enhance drought and salinity stress tolerance in cowpea
- (2021) Sagarika Mishra et al. PHYSIOLOGIA PLANTARUM
- Genome-wide analysis of ARF transcription factors reveals HcARF5 expression profile associated with the biosynthesis of β-ocimene synthase in Hedychium coronarium
- (2021) Farhat Abbas et al. PLANT CELL REPORTS
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- (2021) Rachel Schwope et al. PLANT JOURNAL
- Suberin plasticity to developmental and exogenous cues is regulated by a set of MYB transcription factors
- (2021) Vinay Shukla et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Genome Doubling Event Reshapes Rice Morphology and Products by Modulating Chromatin Signatures and Gene Expression Profiling
- (2021) Chao Zhou et al. Rice
- Transcriptome Reveals Allele Contribution to Heterosis in Maize
- (2021) Jianzhong Wu et al. Frontiers in Plant Science
- Identification of Co-Expressed Genes Related to Theacrine Synthesis in Tea Flowers at Different Developmental Stages
- (2021) Xiaomin Chen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The multi‐omics basis of potato heterosis
- (2021) Dawei Li et al. Journal of Integrative Plant Biology
- JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
- (2021) Jaime A Castro-Mondragon et al. NUCLEIC ACIDS RESEARCH
- Quality control and evaluation of plant epigenomics data
- (2021) Robert J Schmitz et al. PLANT CELL
- Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize
- (2021) Xiuru Dai et al. PLANT JOURNAL
- Widely Targeted Metabolomic and Transcriptomic Analyses of a Novel Albino Tea Mutant of “Rougui”
- (2020) Pengjie Wang et al. Forests
- MYB21 interacts with MYC2 to control the expression of terpene synthase genes in flowers of Freesia hybrida and Arabidopsis thaliana
- (2020) Zhongzhou Yang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Induction of priming by cold stress via inducible volatile cues in neighboring tea plants
- (2020) Mingyue Zhao et al. Journal of Integrative Plant Biology
- The Role of Transcriptional Regulation in Hybrid Vigor
- (2020) Ramon Botet et al. Frontiers in Plant Science
- Tanshinone and salvianolic acid biosynthesis are regulated by SmMYB98 in Salvia miltiorrhiza hairy roots
- (2020) Xiaolong Hao et al. Journal of Advanced Research
- Comparison of Metabolome and Transcriptome of Flavonoid Biosynthesis Pathway in a Purple-Leaf Tea Germplasm Jinmingzao and a Green-Leaf Tea Germplasm Huangdan reveals Their Relationship with Genetic Mechanisms of Color Formation
- (2020) Xuejin Chen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Exploration of the Effects of Different Blue LED Light Intensities on Flavonoid and Lipid Metabolism in Tea Plants via Transcriptomics and Metabolomics
- (2020) Pengjie Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
- (2020) Chengjie Chen et al. Molecular Plant
- Identification and characterization of two sesquiterpene synthase genes involved in volatile-mediated defense in tea plant (Camellia sinensis)
- (2020) Guanhua Liu et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties
- (2020) Weiyi Zhang et al. Nature Communications
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- (2020) Zhi Li et al. PLANT CELL
- TCP5 controls leaf margin development by regulating KNOX and BEL-like transcription factors in Arabidopsis
- (2020) Hongyang Yu et al. JOURNAL OF EXPERIMENTAL BOTANY
- Chinese oolong tea: An aromatic beverage produced under multiple stresses
- (2020) Lanting Zeng et al. TRENDS IN FOOD SCIENCE & TECHNOLOGY
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- (2019) Lin Shao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2019) Katrien Brown et al. NEW PHYTOLOGIST
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- (2019) Feng Y. Cao et al. PLANT JOURNAL
- Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis)
- (2019) Yucheng Zheng et al. MOLECULES
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- (2019) Pengjie Wang et al. PLANTA
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- (2019) Mauricio A. Reynoso et al. SCIENCE
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- (2019) Pengjie Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Nucleotide Metabolism in Plants
- (2019) Claus-Peter Witte et al. PLANT PHYSIOLOGY
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- (2018) Sam W. van Es et al. PLANT JOURNAL
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- (2018) Paja Sijacic et al. PLANT JOURNAL
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- (2018) Feng Yi Cao et al. BMC PLANT BIOLOGY
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- (2018) Frank Hochholdinger et al. CURRENT BIOLOGY
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- (2018) Wenjing Yao et al. Frontiers in Plant Science
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- (2018) Guofang Zhang et al. Journal of Integrative Plant Biology
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- (2018) Jisen Zhang et al. NATURE GENETICS
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- (2017) Aaron Chan et al. JOURNAL OF EXPERIMENTAL BOTANY
- Mapping genome-wide transcription-factor binding sites using DAP-seq
- (2017) Anna Bartlett et al. Nature Protocols
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- (2017) Jingxian Zhang et al. PLANT CELL REPORTS
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- (2017) Amanda J. Waters et al. PLANT JOURNAL
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- (2017) Luis Matías-Hernández et al. PLANT JOURNAL
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- (2017) Zhuoyun Wei et al. PLANT PHYSIOLOGY
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- (2016) Sreeramaiah N. Gangappa et al. Molecular Plant
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
- (2016) Mihaela Pertea et al. Nature Protocols
- MdMyb93 is a regulator of suberin deposition in russeted apple fruit skins
- (2016) Sylvain Legay et al. NEW PHYTOLOGIST
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments
- (2016) Olivia Wilkins et al. PLANT CELL
- ArabidopsisCOGWHEEL1links light perception and gibberellins with seed tolerance to deterioration
- (2016) Eduardo Bueso et al. PLANT JOURNAL
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Complementary activities of TELOMERE REPEAT BINDING proteins and Polycomb Group complexes in transcriptional regulation of target genes
- (2015) Yue Zhou et al. PLANT CELL
- TCP transcription factors are critical for the coordinated regulation ofISOCHORISMATE SYNTHASE 1expression inArabidopsis thaliana
- (2015) Xiaoyan Wang et al. PLANT JOURNAL
- Natural Variation in Monoterpene Synthesis in Kiwifruit: Transcriptional Regulation of Terpene Synthases by NAC and ETHYLENE-INSENSITIVE3-Like Transcription Factors
- (2015) Niels J. Nieuwenhuizen et al. PLANT PHYSIOLOGY
- Decreased seed oil production in FUSCA3 Brassica napus mutant plants
- (2015) Nosheen Elahi et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63
- (2015) Soichiro Noda et al. PLANTA
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- (2015) Zhenfei Sun et al. PLoS Genetics
- High-resolution digital profiling of the epigenome
- (2014) Gabriel E. Zentner et al. NATURE REVIEWS GENETICS
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- (2014) Daniel J. Gibbs et al. NEW PHYTOLOGIST
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- (2014) A. Paschold et al. PLANT CELL
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- (2014) Zhong Wang et al. PLANT JOURNAL
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- (2013) Uma Gaur et al. JOURNAL OF APPLIED GENETICS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Identification of Direct Targets of FUSCA3, a Key Regulator of Arabidopsis Seed Development
- (2013) F. Wang et al. PLANT PHYSIOLOGY
- Functional study of TCP23 in Arabidopsis thaliana during plant development
- (2013) Emilia Balsemão-Pires et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development
- (2013) José A. Aguilar-Martínez et al. Frontiers in Plant Science
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents
- (2012) A. Paschold et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically
- (2012) S. Danisman et al. PLANT PHYSIOLOGY
- MEME-ChIP: motif analysis of large DNA datasets
- (2011) Philip Machanick et al. BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom
- (2011) Feng Chen et al. PLANT JOURNAL
- Heterosis
- (2010) J. A. Birchler et al. PLANT CELL
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
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- Global Analysis of Allele-Specific Expression in Arabidopsis thaliana
- (2009) Xu Zhang et al. GENETICS
- MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis
- (2009) J. Zhou et al. PLANT CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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