Spatial mapping of the total transcriptome by in situ polyadenylation

A small stem-loop-forming region within the 3′-UTR of a nonpolyadenylated LCMV mRNA promotes translation

(2022) Mei Hashizume et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Museum of spatial transcriptomics

(2022) Lambda Moses et al.   NATURE METHODS

High-throughput total RNA sequencing in single cells using VASA-seq

(2022) Fredrik Salmen et al.   NATURE BIOTECHNOLOGY

Method of the Year: spatially resolved transcriptomics

(2021) Vivien Marx   NATURE METHODS

Modular, efficient and constant-memory single-cell RNA-seq preprocessing

(2021) Páll Melsted et al.   NATURE BIOTECHNOLOGY

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

MyomiRs and their multifaceted regulatory roles in muscle homeostasis and amyotrophic lateral sclerosis

(2021) Eleonora Giagnorio et al.   JOURNAL OF CELL SCIENCE

Exploring tissue architecture using spatial transcriptomics

(2021) Anjali Rao et al.   NATURE

The multi-functional reovirus σ3 protein is a virulence factor that suppresses stress granule formation and is associated with myocardial injury

(2021) Yingying Guo et al.   PLoS Pathogens

Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states

(2021) Alina Isakova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration

(2021) David W. McKellar et al.   Communications Biology

Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration

(2020) Andrea J. De Micheli et al.   Cell Reports

Long Noncoding RNA AW112010 Promotes the Differentiation of Inflammatory T Cells by Suppressing IL-10 Expression through Histone Demethylation

(2020) Xiaoming Yang et al.   JOURNAL OF IMMUNOLOGY

A mouse tissue atlas of small noncoding RNA

(2020) Alina Isakova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The long noncoding RNA Meg3 regulates myoblast plasticity and muscle regeneration through epithelial-mesenchymal transition

(2020) Tiffany L. Dill et al.   DEVELOPMENT

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

(2020) Robert R. Stickels et al.   NATURE BIOTECHNOLOGY

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

(2020) Michael J. Petrany et al.   Nature Communications

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

SIDT1 Localizes to Endolysosomes and Mediates Double-Stranded RNA Transport into the Cytoplasm

(2019) Tan A. Nguyen et al.   JOURNAL OF IMMUNOLOGY

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Metazoan MicroRNAs

(2018) David P. Bartel   CELL

Third-generationin situhybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

(2018) Harry M. T. Choi et al.   DEVELOPMENT

A Muscle Stem Cell Support Group: Coordinated Cellular Responses in Muscle Regeneration

(2018) Michael N. Wosczyna et al.   DEVELOPMENTAL CELL

Natural Killer Cell-Based Immunotherapy in Gynecologic Malignancy: A Review

(2018) Locke D. Uppendahl et al.   Frontiers in Immunology

Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

(2018) Mridusmita Saikia et al.   NATURE METHODS

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

(2017) Tom Smith et al.   GENOME RESEARCH

SIDT2 Transports Extracellular dsRNA into the Cytoplasm for Innate Immune Recognition

(2017) Tan A. Nguyen et al.   IMMUNITY

High-resolution myogenic lineage mapping by single-cell mass cytometry

(2017) Ermelinda Porpiglia et al.   NATURE CELL BIOLOGY

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

microRNAs in skeletal muscle development

(2017) Gi Fay Mok et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods

(2015) Jeanette Baran-Gale et al.   Frontiers in Genetics

Cellular dynamics in the muscle satellite cell niche

(2013) C Florian Bentzinger et al.   EMBO REPORTS

microRNA-206 promotes skeletal muscle regeneration and delays progression of Duchenne muscular dystrophy in mice

(2012) Ning Liu et al.   JOURNAL OF CLINICAL INVESTIGATION

The MyomiR Network in Skeletal Muscle Plasticity

(2011) John J. McCarthy   EXERCISE AND SPORT SCIENCES REVIEWS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing

(2011) Anitha D. Jayaprakash et al.   NUCLEIC ACIDS RESEARCH

Poly(A)-binding protein binds to the non-polyadenylated 3' untranslated region of dengue virus and modulates translation efficiency

(2009) C. Polacek et al.   JOURNAL OF GENERAL VIROLOGY