Molecular Evolution of aKlebsiella pneumoniaeST278 Isolate HarboringblaNDM-7and Involved in Nosocomial Transmission

Molecular Characterization by Using Next-Generation Sequencing of Plasmids ContainingblaNDM-7in Enterobacteriaceae from Calgary, Canada

(2015) L. Chen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Carbapenemase-Producing Klebsiella pneumoniae, a Key Pathogen Set for Global Nosocomial Dominance

(2015) Johann D. D. Pitout et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

(2015) Jane Hawkey et al.   BMC GENOMICS

The Role of Epidemic Resistance Plasmids and International High-Risk Clones in the Spread of Multidrug-Resistant Enterobacteriaceae

(2015) Amy J. Mathers et al.   CLINICAL MICROBIOLOGY REVIEWS

Detection and characterization of carbapenemase-producing Enterobacteriaceae in wounded Syrian patients admitted to hospitals in northern Israel

(2015) A. Lerner et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Silver resistance in Gram-negative bacteria: a dissection of endogenous and exogenous mechanisms

(2015) C. P. Randall et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genomic Epidemiology of a Protracted Hospital Outbreak Caused by a Toxin A-Negative Clostridium difficile Sublineage PCR Ribotype 017 Strain in London, England

(2015) M. D. Cairns et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage

(2015) Jason W. Sahl et al.   Scientific Reports

Spread of NDM-1-Producing Enterobacteriaceae in a Neonatal Intensive Care Unit in Istanbul, Turkey

(2014) L. Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

(2014) Pablo Ivan Pereira Ramos et al.   BMC GENOMICS

Travel-Related Carbapenemase-Producing Gram-Negative Bacteria in Alberta, Canada: the First 3 Years

(2014) G. Peirano et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Copy Number Change of the NDM-1 Sequence in a Multidrug-Resistant Klebsiella pneumoniae Clinical Isolate

(2013) Tzu-Wen Huang et al.   PLoS One

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Laboratory Detection of Enterobacteriaceae That Produce Carbapenemases

(2012) D. Doyle et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Partial Excision ofblaKPCfrom Tn4401in Carbapenem-Resistant Klebsiella pneumoniae

(2011) Liang Chen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

New Delhi metallo- -lactamase-1: local acquisition in Ontario, Canada, and challenges in detection

(2011) J. V. Kus et al.   CANADIAN MEDICAL ASSOCIATION JOURNAL

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS