标题
Seq2Neo: A Comprehensive Pipeline for Cancer Neoantigen Immunogenicity Prediction
作者
关键词
-
出版物
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 23, Issue 19, Pages 11624
出版商
MDPI AG
发表日期
2022-10-09
DOI
10.3390/ijms231911624
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Quantification of neoantigen-mediated immunoediting in cancer evolution
- (2022) Tao Wu et al. CANCER RESEARCH
- Neoantigen T-Cell Receptor Gene Therapy in Pancreatic Cancer
- (2022) Rom Leidner et al. NEW ENGLAND JOURNAL OF MEDICINE
- Rationale and Clinical Research Progress on PD-1/PD-L1-Based Immunotherapy for Metastatic Triple-Negative Breast Cancer
- (2022) Yifan Ren et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma
- (2021) Zhuting Hu et al. NATURE MEDICINE
- NeoFox: annotating neoantigen candidates with neoantigen features
- (2021) Franziska Lang et al. BIOINFORMATICS
- DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunity
- (2021) Guangyuan Li et al. BRIEFINGS IN BIOINFORMATICS
- Advances in immunotherapy for hepatocellular carcinoma
- (2021) Bruno Sangro et al. Nature Reviews Gastroenterology & Hepatology
- Ovarian Cancer Immunotherapy and Personalized Medicine
- (2021) Susan Morand et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- VENUS, a Novel Selection Approach to Improve the Accuracy of Neoantigens’ Prediction
- (2021) Guido Leoni et al. Vaccines
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
- (2021) Dietmar Rieder et al. BIOINFORMATICS
- NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
- (2020) Birkir Reynisson et al. NUCLEIC ACIDS RESEARCH
- Neoantimon: A multifunctional R package for identification of tumor-specific neoantigens
- (2020) Takanori Hasegawa et al. BIOINFORMATICS
- Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction
- (2020) Daniel K. Wells et al. CELL
- A Phase Ib Trial of Personalized Neoantigen Therapy Plus Anti-PD-1 in Patients with Advanced Melanoma, Non-small Cell Lung Cancer, or Bladder Cancer
- (2020) Patrick A. Ott et al. CELL
- NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline
- (2019) Ryan O. Schenck et al. BMC BIOINFORMATICS
- Recognition of human gastrointestinal cancer neoantigens by circulating PD-1+ lymphocytes
- (2019) Alena Gros et al. JOURNAL OF CLINICAL INVESTIGATION
- Antigen presentation and tumor immunogenicity in cancer immunotherapy response prediction
- (2019) Shixiang Wang et al. eLife
- DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity
- (2019) Jingcheng Wu et al. Frontiers in Immunology
- Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information
- (2018) S Kim et al. ANNALS OF ONCOLOGY
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- MHCflurry: Open-Source Class I MHC Binding Affinity Prediction
- (2018) Timothy J. O'Donnell et al. Cell Systems
- TPMCalculator: one-step software to quantify mRNA abundance of genomic features
- (2018) Roberto Vera Alvarez et al. BIOINFORMATICS
- HLA-HD: An accurate HLA typing algorithm for next-generation sequencing data
- (2017) Shuji Kawaguchi et al. HUMAN MUTATION
- Prospective identification of neoantigen-specific lymphocytes in the peripheral blood of melanoma patients
- (2016) Alena Gros et al. NATURE MEDICINE
- Safety profiles of anti-CTLA-4 and anti-PD-1 antibodies alone and in combination
- (2016) Celine Boutros et al. Nature Reviews Clinical Oncology
- pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens
- (2016) Jasreet Hundal et al. Genome Medicine
- Immunogenicity of somatic mutations in human gastrointestinal cancers
- (2015) E. Tran et al. SCIENCE
- Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
- (2013) Jorg J. A. Calis et al. PLoS Computational Biology
- Safety, Activity, and Immune Correlates of Anti–PD-1 Antibody in Cancer
- (2012) Suzanne L. Topalian et al. NEW ENGLAND JOURNAL OF MEDICINE
- NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
- (2011) Edita Karosiene et al. IMMUNOGENETICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- NetCTLpan: pan-specific MHC class I pathway epitope predictions
- (2010) Thomas Stranzl et al. IMMUNOGENETICS
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding
- (2009) Hao Zhang et al. BIOINFORMATICS
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