Acesulfame Anoxic Biodegradation Coupled to Nitrate Reduction by Enriched Consortia and Isolated Shinella spp.

Wastewater microorganisms impact the micropollutant biotransformation potential of natural stream biofilms

(2022) Werner L. Desiante et al.   WATER RESEARCH

Artificial sweeteners and cancer risk: Results from the NutriNet-Santé population-based cohort study

(2022) Charlotte Debras et al.   PLOS MEDICINE

Nonnutritive sweeteners can promote the dissemination of antibiotic resistance through conjugative gene transfer

(2021) Zhigang Yu et al.   ISME Journal

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes

(2021) You Che et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Roles in Dissolved Organic Matter Transformation in Full-Scale Wastewater Treatment Processes Revealed by Reactomics and Comparative Genomics

(2021) Liye Wang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Artificial sweeteners stimulate horizontal transfer of extracellular antibiotic resistance genes through natural transformation

(2021) Zhigang Yu et al.   ISME Journal

Acesulfame aerobic biodegradation by enriched consortia and Chelatococcus spp.: Kinetics, transformation products, and genomic characterization

(2021) Yue Huang et al.   WATER RESEARCH

Pin-pointing groundwater infiltration into urban sewers using chemical tracer in conjunction with physically based optimization model

(2020) Zhichao Zhao et al.   WATER RESEARCH

Chloramphenicol biodegradation by enriched bacterial consortia and isolated strain Sphingomonas sp. CL5.1: The reconstruction of a novel biodegradation pathway

(2020) Jiayu Zhang et al.   WATER RESEARCH

Trends in artificial sweetener consumption: A 7-year wastewater-based epidemiology study in Queensland, Australia

(2020) Dandan Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Sated by a Zero-Calorie Sweetener: Wastewater Bacteria Can Feed on Acesulfame

(2019) Sabine Kleinsteuber et al.   Frontiers in Microbiology

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Emerging Biodegradation of the Previously Persistent Artificial Sweetener Acesulfame in Biological Wastewater Treatment

(2018) Stefanie Kahl et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

(2018) Pawel S Krawczyk et al.   NUCLEIC ACIDS RESEARCH

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

(2017) Matthew R Olm et al.   ISME Journal

Redox and Temperature Dependent Attenuation of Twenty Organic Micropollutants ‐ A Systematic Column Study

(2017) Victoria Burke et al.   WATER ENVIRONMENT RESEARCH

Biodegradation of the artificial sweetener acesulfame in biological wastewater treatment and sandfilters

(2017) Sandro Castronovo et al.   WATER RESEARCH

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Aerobic Degradation of Sulfadiazine by Arthrobacter spp.: Kinetics, Pathways, and Genomic Characterization

(2016) Yu Deng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Photocatalytic transformation of acesulfame: Transformation products identification and embryotoxicity study

(2016) Adela Jing Li et al.   WATER RESEARCH

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Single yeast cells vary in transcription activity not in delay time after a metabolic shift

(2014) Anne Schwabe et al.   Nature Communications

Artificial Sweeteners in a Large Canadian River Reflect Human Consumption in the Watershed

(2013) John Spoelstra et al.   PLoS One

EU-wide monitoring survey on emerging polar organic contaminants in wastewater treatment plant effluents

(2013) Robert Loos et al.   WATER RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A new acylamidase from Rhodococcus erythropolis TA37 can hydrolyze N-substituted amides

(2010) K. V. Lavrov et al.   BIOCHEMISTRY-MOSCOW

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

How to live at very low substrate concentration

(2010) Thomas Egli   WATER RESEARCH

Removal of Pharmaceutical and Personal Care Products (PPCPs) under nitrifying and denitrifying conditions

(2010) Sonia Suarez et al.   WATER RESEARCH

Analysis and occurrence of seven artificial sweeteners in German waste water and surface water and in soil aquifer treatment (SAT)

(2009) Marco Scheurer et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Ubiquitous Occurrence of the Artificial Sweetener Acesulfame in the Aquatic Environment: An Ideal Chemical Marker of Domestic Wastewater in Groundwater

(2009) Ignaz J. Buerge et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH