IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq

(2014) D. A. Bitton et al.   GENOME RESEARCH

cellXpress: a fast and user-friendly software platform for profiling cellular phenotypes

(2013) Danai Laksameethanasan et al.   BMC BIOINFORMATICS

Alternative splicing: a pivotal step between eukaryotic transcription and translation

(2013) Alberto R. Kornblihtt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3

(2013) Clare Gooding et al.   NUCLEIC ACIDS RESEARCH

HnRNP L and hnRNP LL antagonistically modulate PTB-mediated splicing suppression of CHRNA1 pre-mRNA

(2013) Mohammad Alinoor Rahman et al.   Scientific Reports

Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo

(2012) Allison J Taggart et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

(2012) Matteo Giulietti et al.   NUCLEIC ACIDS RESEARCH

RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae

(2012) M. Plass et al.   RNA

Loss of exon identity is a common mechanism of human inherited disease

(2011) T. Sterne-Weiler et al.   GENOME RESEARCH

SpliceAid 2: A database of human splicing factors expression data and RNA target motifs

(2011) Francesco Piva et al.   HUMAN MUTATION

AG-dependent 3′-splice sites are predisposed to aberrant splicing due to a mutation at the first nucleotide of an exon

(2011) Yuan Fu et al.   NUCLEIC ACIDS RESEARCH

Secondary structure is required for 3′ splice site recognition in yeast

(2011) Ondřej Gahura et al.   NUCLEIC ACIDS RESEARCH

Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes

(2011) K. H. Lim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for widespread association of mammalian splicing and conserved long-range RNA structures

(2011) D. D. Pervouchine et al.   RNA

The intricate relationship between RNA structure, editing, and splicing

(2011) Leila E. Rieder et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Analysis and design of RNA sequencing experiments for identifying isoform regulation

(2010) Yarden Katz et al.   NATURE METHODS

Genome-Wide Association between Branch Point Properties and Alternative Splicing

(2010) André Corvelo et al.   PLoS Computational Biology

SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans

(2009) F. Piva et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Ab initio prediction of mutation-induced cryptic splice-site activation and exon skipping

(2009) Petr Divina et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Myasthenic syndrome due to defects in rapsyn: Clinical and molecular findings in 39 patients

(2009) M. Milone et al.   NEUROLOGY

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

(2009) François-Olivier Desmet et al.   NUCLEIC ACIDS RESEARCH

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Human branch point consensus sequence is yUnAy

(2008) Kaiping Gao et al.   NUCLEIC ACIDS RESEARCH