Agricultural intensification weakens the soil health index and stability of microbial networks

Microbial phylogenetic relatedness links to distinct successional patterns of bacterial and fungal communities

(2022) Qiang Lin et al.   ENVIRONMENTAL MICROBIOLOGY

Variation in Soil Bacterial and Fungal Community Composition at Different Successional Stages of a Broad-Leaved Korean Pine Forest in the Lesser Hinggan Mountains

(2022) Kaiyue Zhu et al.   Forests

Wildfire drives the transition from deterministic- to stochastic-dominated community assembly of abundant bacterial in forest soils

(2022) Qianqian Qin et al.   CATENA

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Specialized metabolic functions of keystone taxa sustain soil microbiome stability

(2021) Weibing Xun et al.   Microbiome

Bacterial communities drive the resistance of soil multifunctionality to land-use change in karst soils

(2021) Liyang Yang et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Network Properties of Local Fungal Communities Reveal the Anthropogenic Disturbance Consequences of Farming Practices in Vineyard Soils

(2021) Rüdiger Ortiz-Álvarez et al.   mSystems

Effects of vegetation succession and shrub clearing after land abandonment on the hydrological dynamics in the Central Spanish Pyrenees

(2021) M. Khorchani et al.   CATENA

Size compartmentalization of energy channeling in terrestrial belowground food webs

(2021) Anton M. Potapov et al.   ECOLOGY

Dramatic shifts in fungal communities following application of hairy vetch (Vicia villosa Roth L.) in upland of Ultisol

(2021) Lele Jin et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Low‐intensity land‐use enhances soil microbial activity, biomass and fungal‐to‐bacterial ratio in current and future climates

(2021) Marie Sünnemann et al.   JOURNAL OF APPLIED ECOLOGY

Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation

(2021) Ming-Hui Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics

(2021) Haiping Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Conversion of a High-Altitude Temperate Forest for Agriculture Reduced Alpha and Beta Diversity of the Soil Fungal Communities as Revealed by a Metabarcoding Analysis

(2021) Yendi E. Navarro-Noya et al.   Frontiers in Microbiology

Predicting measures of soil health using the microbiome and supervised machine learning

(2021) Roland C. Wilhelm et al.   SOIL BIOLOGY & BIOCHEMISTRY

Agricultural land‐use history and restoration impact soil microbial biodiversity

(2020) Nash E. Turley et al.   JOURNAL OF APPLIED ECOLOGY

Network analysis reveals the strengthening of microbial interaction in biological soil crust development in the Mu Us Sandy Land, northwestern China

(2020) Hong Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Using soil bacterial communities to predict physico-chemical variables and soil quality

(2020) Syrie M. Hermans et al.   Microbiome

Saline-alkali soil applied with vermicompost and humic acid fertilizer improved macroaggregate microstructure to enhance salt leaching and inhibit nitrogen losses

(2020) Mengli Liu et al.   APPLIED SOIL ECOLOGY

The stronger impact of inorganic nitrogen fertilization on soil bacterial community than organic fertilization in short-term condition

(2020) Meiling Zhang et al.   GEODERMA

Interacting effects of land use type, microbes and plant traits on soil aggregate stability

(2020) Luis Merino-Martín et al.   SOIL BIOLOGY & BIOCHEMISTRY

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Conservation tillage increased soil bacterial diversity and improved soil nutrient status on the Loess Plateau in China

(2019) Hao Wang et al.   Archives of Agronomy and Soil Science

Soil quality of an Iranian forest ecosystem after conversion to various types of land use

(2018) M. H. Rasouli-Sadaghiani et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

Linking soil bacterial and fungal communities to vegetation succession following agricultural abandonment

(2018) Kerong Zhang et al.   PLANT AND SOIL

Predicting perturbation patterns from the topology of biological networks

(2018) Marc Santolini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential biodiversity responses between kingdoms (plants, fungi, bacteria and metazoa) along an Alpine succession gradient

(2018) Matteo Montagna et al.   MOLECULAR ECOLOGY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Soil disturbance and water stress interact to influence arbuscular mycorrhizal fungi, rhizosphere bacteria and potential for N and C cycling in an agricultural soil

(2018) Bede S. Mickan et al.   BIOLOGY AND FERTILITY OF SOILS

Soil aggregation and associated microbial communities modify the impact of agricultural management on carbon content

(2017) Pankaj Trivedi et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial communities in soil chronosequences with distinct parent material: the effect of soil pH and litter quality

(2017) Fernando D. Alfaro et al.   JOURNAL OF ECOLOGY

Network structure embracing mutualism–antagonism continuums increases community robustness

(2017) Alicia Montesinos-Navarro et al.   Nature Ecology & Evolution

Soil Organic Carbon and Nitrogen Fractions under Different Land Uses and Tillage Practices

(2016) Mengyun Liu et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Optimal network topology for structural robustness based on natural connectivity

(2016) Guan-sheng Peng et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Belowground carbon trade among tall trees in a temperate forest

(2016) T. Klein et al.   SCIENCE

Response of Soil Properties and Microbial Communities to Agriculture: Implications for Primary Productivity and Soil Health Indicators

(2016) Pankaj Trivedi et al.   Frontiers in Plant Science

Soil carbon dynamics following land-use change varied with temperature and precipitation gradients: evidence from stable isotopes

(2015) Kerong Zhang et al.   GLOBAL CHANGE BIOLOGY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China

(2015) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Endogone, one of the oldest plant-associated fungi, host unique Mollicutes-related endobacteria

(2014) Alessandro Desirò et al.   NEW PHYTOLOGIST

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

On the dimensionality of ecological stability

(2013) Ian Donohue et al.   ECOLOGY LETTERS

Effect of long term no-till and conventional tillage practices on soil quality

(2013) Irfan Aziz et al.   SOIL & TILLAGE RESEARCH

Carbon-nutrient stoichiometry to increase soil carbon sequestration

(2013) Clive A. Kirkby et al.   SOIL BIOLOGY & BIOCHEMISTRY

Controls on soil microbial community stability under climate change

(2013) Franciska T. de Vries et al.   Frontiers in Microbiology

Sustainability of social–ecological systems under conservation projects: Lessons from a biodiversity hotspot in western China

(2012) Kerong Zhang et al.   BIOLOGICAL CONSERVATION

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

Assessing the effects of Cu and pH on microorganisms in highly acidic vineyard soils

(2012) D. Fernández-Calviño et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

(2012) Acácio A. Navarrete et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Diversity Stabilizes Community Productivity

(2012) Nico Eisenhauer et al.   PLoS One

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Arbuscular mycorrhiza and soil nitrogen cycling

(2011) Stavros D. Veresoglou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas

(2010) Luisa M. Manici et al.   EUROPEAN JOURNAL OF AGRONOMY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Considering fungal:bacterial dominance in soils – Methods, controls, and ecosystem implications

(2010) Michael S. Strickland et al.   SOIL BIOLOGY & BIOCHEMISTRY

A global meta-analysis of soil exchangeable cations, pH, carbon, and nitrogen with afforestation

(2009) Sean T. Berthrong et al.   ECOLOGICAL APPLICATIONS

Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats

(2009) Rashid Nazir et al.   FEMS MICROBIOLOGY ECOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

The Global Potential of Bioenergy on Abandoned Agriculture Lands

(2008) J. Elliott Campbell et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY