Association mapping reveals the genetic architecture of tomato response to water deficit: focus on major fruit quality traits

Water deficit effects on tomato quality depend on fruit developmental stage and genotype

(2016) Julie Ripoll et al.   JOURNAL OF PLANT PHYSIOLOGY

Dissecting quantitative trait variation in the resequencing era: complementarity of bi-parental, multi-parental and association panels

(2016) Laura Pascual et al.   PLANT SCIENCE

The Potential of the MAGIC TOM Parental Accessions to Explore the Genetic Variability in Tomato Acclimation to Repeated Cycles of Water Deficit and Recovery

(2016) Julie Ripoll et al.   Frontiers in Plant Science

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

(2015) Yongwook Choi et al.   BIOINFORMATICS

Genomic variation in tomato, from wild ancestors to contemporary breeding accessions

(2015) José Blanca et al.   BMC GENOMICS

Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods

(2015) Inka Gawenda et al.   PLANT BREEDING

Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis

(2015) Johanna A. Bac-Molenaar et al.   PLANT CELL AND ENVIRONMENT

Exploring a Tomato Landraces Collection for Fruit-Related Traits by the Aid of a High-Throughput Genomic Platform

(2015) Adriana Sacco et al.   PLoS One

Genotype by watering regime interaction in cultivated tomato: lessons from linkage mapping and gene expression

(2015) Elise Albert et al.   THEORETICAL AND APPLIED GENETICS

Wide-genome QTL mapping of fruit quality traits in a tomato RIL population derived from the wild-relative species Solanum pimpinellifolium L.

(2015) Carmen Capel et al.   THEORETICAL AND APPLIED GENETICS

High-resolution mapping of a major effect QTL from wild tomato Solanum habrochaites that influences water relations under root chilling

(2015) Erin M. Arms et al.   THEORETICAL AND APPLIED GENETICS

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

"Missing" G x E Variation Controls Flowering Time in Arabidopsis thaliana

(2015) Eriko Sasaki et al.   PLoS Genetics

Association studies including genotype by environment interactions: prospects and limits

(2014) Abdoul-Aziz Saïdou et al.   BMC GENETICS

Genome-wide data (ChIP-seq) enabled identification of cell wall-related and aquaporin genes as targets of tomato ASR1, a drought stress-responsive transcription factor

(2014) Martiniano M Ricardi et al.   BMC PLANT BIOLOGY

Glycoprotein composition along the pistil of Malus x domestica and the modulation of pollen tube growth

(2014) Juan M Losada et al.   BMC PLANT BIOLOGY

Genotype–environment interactions affecting preflowering physiological and morphological traits ofBrassica rapagrown in two watering regimes

(2014) Mohamed El-Soda et al.   JOURNAL OF EXPERIMENTAL BOTANY

Water shortage and quality of fleshy fruits—making the most of the unavoidable

(2014) Julie Ripoll et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response ofArabidopsis thalianato drought

(2014) MOHAMED EL-SODA et al.   PLANT CELL AND ENVIRONMENT

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

(2014) C. Sauvage et al.   PLANT PHYSIOLOGY

Overexpression of tomato chloroplast-targeted DnaJ protein enhances tolerance to drought stress and resistance to Pseudomonas solanacearum in transgenic tobacco

(2014) Guodong Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A genome-wide identification of chromosomal regions determining nitrogen use efficiency components in wheat (Triticum aestivum L.)

(2014) Fabien Cormier et al.   THEORETICAL AND APPLIED GENETICS

Genotype × environment interaction QTL mapping in plants: lessons from Arabidopsis

(2014) Mohamed El-Soda et al.   TRENDS IN PLANT SCIENCE

Whole-Genome Analysis of Multienvironment or Multitrait QTL in MAGIC

(2014) A. P. Verbyla et al.   G3-Genes Genomes Genetics

Association Mapping of Germination Traits in Arabidopsis thaliana Under Light and Nutrient Treatments: Searching for G×E Effects

(2014) Ginnie D. Morrison et al.   G3-Genes Genomes Genetics

An update on source-to-sink carbon partitioning in tomato

(2014) Sonia Osorio et al.   Frontiers in Plant Science

Assessment of the water stress effects on peach fruit quality and size using a fruit tree model, QualiTree

(2013) José M. Mirás-Avalos et al.   AGRICULTURAL WATER MANAGEMENT

Responses of drip irrigated tomato (Solanum lycopersicum L.) yield, quality and water productivity to various soil matric potential thresholds in an arid region of Northwest China

(2013) Jianhua Zheng et al.   AGRICULTURAL WATER MANAGEMENT

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

Hormonal and metabolic regulation of source–sink relations under salinity and drought: From plant survival to crop yield stability

(2013) Alfonso A. Albacete et al.   BIOTECHNOLOGY ADVANCES

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events

(2013) Mathilde Causse et al.   BMC GENOMICS

TheArabidopsis GIBBERELLIN METHYL TRANSFERASE 1suppresses gibberellin activity, reduces whole-plant transpiration and promotes drought tolerance in transgenic tomato

(2013) IDO NIR et al.   PLANT CELL AND ENVIRONMENT

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Genome-Wide Identification and Expression Analysis of Aquaporins in Tomato

(2013) Stefan Reuscher et al.   PLoS One

Source-to-sink transport of sugar and regulation by environmental factors

(2013) Remi Lemoine et al.   Frontiers in Plant Science

COLD SHOCK DOMAIN PROTEIN 3 is involved in salt and drought stress tolerance in Arabidopsis

(2013) Myung-Hee Kim et al.   FEBS Open Bio

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions

(2012) D. L. Des Marais et al.   PLANT CELL

Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato

(2012) Sung-Chur Sim et al.   PLoS One

Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species

(2012) Jiaxin Xu et al.   THEORETICAL AND APPLIED GENETICS

Single Nucleotide Polymorphism Discovery in Cultivated Tomato via Sequencing by Synthesis

(2012) John P. Hamilton et al.   Plant Genome

Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

(2011) Benjamin Petre et al.   BMC PLANT BIOLOGY

Impact of sustained-deficit irrigation on tree growth, mineral nutrition, fruit yield and quality of mango in Spain

(2011) Víctor Hugo Durán Zuazo et al.   Fruits

High invertase activity in tomato reproductive organs correlates with enhanced sucrose import into, and heat tolerance of, young fruit

(2011) Zhimiao Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Any trait or trait-related allele can confer drought tolerance: just design the right drought scenario

(2011) F. Tardieu   JOURNAL OF EXPERIMENTAL BOTANY

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

An ethylene response factor (ERF5) promoting adaptation to drought and salt tolerance in tomato

(2011) Yu Pan et al.   PLANT CELL REPORTS

A Nucleotide Metabolite Controls Stress-Responsive Gene Expression and Plant Development

(2011) Hao Chen et al.   PLoS One

Tomato fruit weight 11.3 maps close to fasciated on the bottom of chromosome 11

(2011) Zejun Huang et al.   THEORETICAL AND APPLIED GENETICS

Detection and use of QTL for complex traits in multiple environments

(2010) Fred A van Eeuwijk et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato

(2010) Pengjuan Gong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Consumer Preferences for Fresh Tomato at the European Scale: A Common Segmentation on Taste and Firmness

(2010) Mathilde Causse et al.   JOURNAL OF FOOD SCIENCE

Sugar Input, Metabolism, and Signaling Mediated by Invertase: Roles in Development, Yield Potential, and Response to Drought and Heat

(2010) Yong-Ling Ruan et al.   Molecular Plant

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Yield quantitative trait loci from wild tomato are predominately expressed by the shoot

(2010) Amit Gur et al.   THEORETICAL AND APPLIED GENETICS

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents

(2009) Maria Inés Zanor et al.   JOURNAL OF EXPERIMENTAL BOTANY

Extracellular invertase LIN6 of tomato: a pivotal enzyme for integration of metabolic, hormonal, and stress signals is regulated by a diurnal rhythm

(2009) R. K. Proels et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of soybean ubiquitin-conjugating enzyme gene GmUBC2 confers enhanced drought and salt tolerance through modulating abiotic stress-responsive gene expression in Arabidopsis

(2009) Guo-An Zhou et al.   PLANT MOLECULAR BIOLOGY

RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility

(2009) M. I. Zanor et al.   PLANT PHYSIOLOGY

Agricultural green and blue water consumption and its influence on the global water system

(2008) Stefanie Rost et al.   WATER RESOURCES RESEARCH