Article
Spectroscopy
XueXue Miao, Ying Miao, Yang Liu, ShuHua Tao, HuaBin Zheng, JieMin Wang, WeiQin Wang, QiYuan Tang
Summary: This study investigated the feasibility of using near-infrared (NIR) spectroscopy to rapidly analyze the nitrogen content in rice plants. A predictive model was established using spectral data from 447 rice samples at various growth stages. Different spectral preprocessing methods and characteristic selection methods were compared, and the synergy interval partial least-squares (SiPLS) method showed the best performance. The results demonstrate that NIR spectroscopy combined with the SiPLS algorithm can be used to quickly determine nitrogen content in rice plants.
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY
(2023)
Article
Spectroscopy
Gerard Dumancas, Indra Adrianto
Summary: This study developed a stacked regression ensemble approach using near infrared spectroscopic method for accurate determination of biomass compositional analyses. The performance of various machine learning techniques was compared, and the stacked regression outperformed other methods, providing a more accurate prediction of biomass compositions.
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY
(2022)
Article
Food Science & Technology
Lei-Ming Yuan, Lifan You, Xiaofeng Yang, Xiaojing Chen, Guangzao Huang, Xi Chen, Wen Shi, Yiye Sun
Summary: A strategy of fusing consensus models based on the genetic algorithm was proposed to measure the soluble solids content in peaches. The consensus models achieved better performance in predicting the SSC of peaches compared to traditional optimized models.
Article
Agriculture, Dairy & Animal Science
Fang-Li Qin, Xin-Chun Wang, Si-Ran Ding, Guang-Sheng Li, Zhuo-Cheng Hou
Summary: This study successfully developed a fast method for measuring the fat content of Peking duck using near-infrared spectroscopy, which demonstrated good predictive abilities.
Article
Engineering, Chemical
Abdoulah Ly, Ines Esma Achouri, Ryan Gosselin, Nicolas Abatzoglou
Summary: This study converted a lab-scale fluidized bed dryer into a fluidized bed foam granulator and dryer, developed a partial least squares regression model for monitoring granules water content, and provided sufficient evidence of the feasibility of the fluidized bed foam granulation process.
CHEMICAL ENGINEERING SCIENCE
(2022)
Article
Environmental Sciences
Guo Jiang, Xi Chen, Jinlin Wang, Shanshan Wang, Shuguang Zhou, Yong Bai, Tao Liao, He Yang, Kai Ma, Xianglian Fan
Summary: Rock geochemical methods are time-consuming and costly. This study explores the potential of using visible-near-infrared spectroscopy to estimate metal element content in rocks. Several factors were investigated including spectral resolution, preprocessing, band indices, and characteristic band selection. The results show that using band indices can provide a more accurate estimation of metal element content, providing a new technical method for efficient acquisition of regional mineralization indicator element content distribution.
Article
Chemistry, Applied
Ulisses F. Oliveira, Annanda M. Costa, Jussara Roque, Wilson Cardoso, Sergio Y. Motoike, Marcio H. P. Barbosa, Reinaldo F. Teofilo
Summary: A method for early quantification of unripe macaw fruits oil content using near-infrared spectroscopy and partial least squares was proposed, which could accurately predict the oil content within 30 days after fruit harvest, thus reducing the costs of quality control and storage for macaw palm.
Article
Chemistry, Multidisciplinary
Liwei Zhu, Rebecca Njeri Damaris, Yong Lv, Qianxi Du, Taoxiong Shi, Jiao Deng, Qingfu Chen
Summary: This article introduces a model established using near-infrared reflectance spectroscopy combined with quantitative partial least squares method to test the content of leucine and tyrosine in Golden Tartary buckwheat leaves, providing important scientific basis for the breeding and processing of Golden Tartary buckwheat.
APPLIED SCIENCES-BASEL
(2022)
Article
Biochemical Research Methods
Ruoyu Tang, Xinyu He, Ruiqi Wang
Summary: The study presents a general computational method for constructing maps between different cell fates and parametric conditions by systematic perturbations. The method does not require accurate parameter measurements or bifurcations. The maps obtained can help in understanding how systematic perturbations drive cell fate decisions and transitions, providing valuable information for predicting and controlling cell states.
Article
Spectroscopy
Yong Hao, Yuanhang Lu, Xiyan Li
Summary: In this study, a stability monitor model was established using the multivariate statistical process control (MSPC) method, and a mixed modeling approach combining robust regression (Rob-Reg) and partial least squares regression (PLSR) was employed to eliminate the variability influence of sample and instrument states. The results showed that MSPC effectively monitored the consistency of the same batch samples measured at different times or different batches, and the Rob-Reg method outperformed the PLSR method in predicting the different batches of samples.
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY
(2022)
Article
Biochemistry & Molecular Biology
Claudia Scappaticci, Stella Spera, Alessandra Biancolillo, Federico Marini
Summary: In this study, a fast and environmentally friendly analytical strategy using near-infrared spectroscopy and chemometrics was developed to identify and quantify the addition of a drug in alcoholic drinks. The approach showed high accuracy in detecting the presence of the drug and quantifying its concentration.
Article
Soil Science
Yongsheng Hong, Muhammad Abdul Munnaf, Angela Guerrero, Songchao Chen, Yaolin Liu, Zhou Shi, Abdul Mounem Mouazen
Summary: Spectral techniques, including the fusion of visible-to-near-infrared and mid-infrared absorbance, can improve the estimation of soil organic carbon. The use of continuous wavelet transform and optimal band combination strategies contribute to the accuracy of the prediction models. Among the investigated models, the combination of visible-to-near-infrared and mid-infrared using the optimal band combination fusion at a specific scale yielded the best prediction.
SOIL & TILLAGE RESEARCH
(2022)
Article
Chemistry, Applied
Xue Jintao, Yang Quanwei, Li Chunyan, Liu Xiaolong, Niu Bingxuan
Summary: The NIRS method enables rapid and accurate analysis of the main active components of LJF, as well as its quality in relation to various factors. This method holds promise as an effective tool for LJF quality analysis.
Article
Food Science & Technology
Annelisa Arruda de Brito, Fernanda Campos, Abadia dos Reis Nascimento, Gilmarcos de Carvalho Correa, Flavio Alves da Silva, Gustavo Henrique de Almeida Teixeira, Luis Carlos Cunha Junior
Summary: This study utilized partial least square models and near-infrared spectroscopy to analyze tomatoes from different regions, resulting in accurate prediction models for solid content in tomatoes.
Article
Agricultural Engineering
Zheng Bao, Hairong Guo, Jiarui Li, Yue Li, Li He
Summary: The feasibility of evaluating acetic acid, propionic acid, and butyric acid in anaerobic digestion systems using NIRS was investigated. The best combinations of preprocessing methods and feature selection were determined. The developed near-infrared spectral model showed promising results for the quantitative prediction of VFA content.
BIOMASS & BIOENERGY
(2023)
Article
Biodiversity Conservation
Zixiao Guo, Xinnian Li, Ziwen He, Yuchen Yang, Wenqing Wang, Cairong Zhong, Anthony J. Greenberg, Chung-I Wu, Norman C. Duke, Suhua Shi
GLOBAL CHANGE BIOLOGY
(2018)
Article
Biochemistry & Molecular Biology
Zuyao Liu, Guoling Chen, Tianqi Zhu, Zhaochi Zeng, Zhitong Lyu, Jian Wang, Kevin Messenger, Anthony Greenberg, Zixiao Guo, Ziheng Yang, Suhua Shi, Yingyong Wang
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2018)
Article
Genetics & Heredity
Anthony J. Greenberg
G3-GENES GENOMES GENETICS
(2018)
Article
Chemistry, Multidisciplinary
David A. Sievers, Erik M. Kuhn, Vicki S. Thompson, Neal A. Yancey, Amber N. Hoover, Michael G. Resch, Edward J. Wolfrum
ACS SUSTAINABLE CHEMISTRY & ENGINEERING
(2020)
Article
Chemistry, Multidisciplinary
Allison E. Ray, C. Luke Williams, Amber N. Hoover, Chenlin Li, Kenneth L. Sale, Rachel M. Emerson, Jordan Klinger, Ethan Oksen, Akash Narani, Jipeng Yan, Christine M. Beavers, Deepti Tanjore, Manal Yunes, Elizabeth Bose, Juan H. Leal, Julie L. Bowen, Edward J. Wolfrum, Michael G. Resch, Troy A. Semelsberger, Bryon S. Donohoe
ACS SUSTAINABLE CHEMISTRY & ENGINEERING
(2020)
Article
Energy & Fuels
Edward J. Wolfrum, Courtney Payne, Alexa Schwartz, Joshua Jacobs, Robert W. Kressin
BIOENERGY RESEARCH
(2020)
Article
Plant Sciences
Bathe Diop, Diane R. Wang, Khady N. Drame, Vernon Gracen, Pangirayi Tongoona, Daniel Dzidzienyo, Eric Nartey, Anthony J. Greenberg, Saliou Djiba, Eric Y. Danquah, Susan R. McCouch
JOURNAL OF EXPERIMENTAL BOTANY
(2020)
Article
Genetics & Heredity
Nicholas G. Karavolias, Anthony J. Greenberg, Luz S. Barrero, Lyza G. Maron, Yuxin Shi, Eliana Monteverde, Miguel A. Pineros, Susan R. McCouch
G3-GENES GENOMES GENETICS
(2020)
Article
Plant Sciences
Giovanni Melandri, Mouritala Sikirou, Juan D. Arbelaez, Afeez Shittu, Vimal K. Semwal, Kadougoudiou A. Konate, Alhassan T. Maji, Steven A. Ngaujah, Inoussa Akintayo, Vishnu Govindaraj, Yuxin Shi, Francisco J. Agosto-Perez, Anthony J. Greenberg, Gary Atlin, Venuprasad Ramaiah, Susan R. McCouch
Summary: This study found that the genetic mechanism of rice tolerance to high iron-associated stress in the field is complex, with favorable alleles mainly derived from the indica subpopulation. The study suggests that a strategy combining recurrent selection and genomic selection could enhance tolerance to this prevalent abiotic stress in West African rice varieties.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Agronomy
Joshua N. Cobb, Chen Chen, Yuxin Shi, Lyza G. Maron, Danni Liu, Mike Rutzke, Anthony Greenberg, Eric Craft, Jon Shaff, Edyth Paul, Kazi Akther, Shaokui Wang, Leon V. Kochian, Dabao Zhang, Min Zhang, Susan R. McCouch
Summary: Association analysis for ionomic concentrations of 20 elements identified independent genetic factors underlying the root and shoot ionomes of rice, providing a platform for selecting and dissecting causal genetic variants. The genetic basis for root and shoot ionomes was highly distinct; 78 loci were associated with roots and 36 loci with shoots, with no overlapping genomic regions for the same element across tissues.
THEORETICAL AND APPLIED GENETICS
(2021)
Article
Genetics & Heredity
Aimei Dai, Yushuai Wang, Anthony Greenberg, Zhongqi Liufu, Tian Tang
Summary: The study reveals a significant expansion of MSL binding sites in Drosophila, particularly on autosomes, with most of the newly-bound regions likely unrelated to dosage compensation, leading to increased expression divergence between D. melanogaster and its close relative. While sites related to dosage compensation show clear signs of adaptive evolution, these signs are even more pronounced among autosomal regions.
FRONTIERS IN GENETICS
(2021)
Article
Multidisciplinary Sciences
Alexander V. Borodin, Zhanna V. Emanuilova, Sergei Y. Smolov, Olga Ogneva, Nina Konovalova, Elena J. Terentyeva, Natalia I. Serova, D. N. Efimov, V. I. Fisinin, Anthony Greenberg, Yakov Alekseev
Summary: The avian leukosis virus (ALV) is a serious threat to commercial poultry management. Traditional virus detection methods are problematic, so we developed a new PCR system for ALV detection and elimination. We successfully eradicated ALV from a broiler breeding program and this approach can be applied to other subgroups and pathogens.
Article
Plant Sciences
Georgia C. Eizenga, HyunJung Kim, Janelle K. H. Jung, Anthony J. Greenberg, Jeremy D. Edwards, Maria Elizabeth B. Naredo, Maria Celeste N. Banaticla-Hilario, Sandra E. Harrington, Yuxin Shi, Jennifer A. Kimball, Lisa A. Harper, Kenneth L. McNally, Susan R. McCouch
Summary: Crop wild relatives, such as the Oryza rufipogon species complex, serve as valuable genetic resources for breeding. This study focused on genotype-by-sequencing and phenotypic characterization of 240 diverse ORSC accessions, identifying core groups suitable for domestication studies. The research also highlighted the potential of a subset of accessions with high O. sativa admixture as a pre-breeding pool for introducing novel variation into elite breeding lines.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Chemistry, Analytical
Theresa M. M. Curtis, Annabella M. M. Nilon, Anthony J. J. Greenberg, Matthew Besner, Jacob J. J. Scibek, Jennifer A. A. Nichols, Janet L. L. Huie
Summary: Non-olfactory cells expressing functional olfactory receptors (ORs) have biosensor potential. Our study demonstrates that odorant binding in non-olfactory cells leads to cytoskeletal changes, decreased integrity of cell junctions, and decreased electrical resistance, indicating a new physiological role of olfactory receptor signaling in cell barriers.
Review
Energy & Fuels
Stephen R. Decker, Anne E. Harman-Ware, Renee M. Happs, Edward J. Wolfrum, Gerald A. Tuskan, David Kainer, Gbekeloluwa B. Oguntimein, Miguel Rodriguez, Deborah Weighill, Piet Jones, Daniel Jacobson
FRONTIERS IN ENERGY RESEARCH
(2018)