标题
RNA viromes from terrestrial sites across China expand environmental viral diversity
作者
关键词
-
出版物
Nature Microbiology
Volume 7, Issue 8, Pages 1312-1323
出版商
Springer Science and Business Media LLC
发表日期
2022-07-29
DOI
10.1038/s41564-022-01180-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
- (2022) Ahmed A. Zayed et al. SCIENCE
- A new coronavirus associated with human respiratory disease in China
- (2020) Fan Wu et al. NATURE
- Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
- (2020) Yuri I. Wolf et al. Nature Microbiology
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- SignalP 5.0 improves signal peptide predictions using deep neural networks
- (2019) José Juan Almagro Armenteros et al. NATURE BIOTECHNOLOGY
- Diversities and potential biogeochemical impacts of mangrove soil viruses
- (2019) Min Jin et al. Microbiome
- Identification and genetic characterization of a porcine hepe-astrovirus (bastrovirus) in the United States
- (2019) Fernando V. Bauermann et al. ARCHIVES OF VIROLOGY
- Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
- (2019) Evan P. Starr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Using Metagenomics to Characterize an Expanding Virosphere
- (2018) Yong-Zhen Zhang et al. CELL
- Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition
- (2018) Chao Wang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Meta-transcriptomics and the evolutionary biology of RNA viruses
- (2018) Mang Shi et al. VIRUS RESEARCH
- Effects of Nitrogen and Phosphorus Inputs on Soil Bacterial Abundance, Diversity, and Community Composition in Chinese Fir Plantations
- (2018) Qing Wang et al. Frontiers in Microbiology
- Origins and Evolution of the Global RNA Virome
- (2018) Yuri I. Wolf et al. mBio
- Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
- (2018) Gareth Trubl et al. mSystems
- Virus taxonomy in the age of metagenomics
- (2017) Peter Simmonds et al. NATURE REVIEWS MICROBIOLOGY
- Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
- (2017) Ilias Lagkouvardos et al. PeerJ
- FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance
- (2016) Syun-ichi Urayama et al. MICROBES AND ENVIRONMENTS
- Redefining the invertebrate RNA virosphere
- (2016) Mang Shi et al. NATURE
- Uniclust databases of clustered and deeply annotated protein sequences and alignments
- (2016) Milot Mirdita et al. NUCLEIC ACIDS RESEARCH
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses
- (2015) Ci-Xiu Li et al. eLife
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods
- (2013) Kurt E. Williamson et al. BIOLOGY AND FERTILITY OF SOILS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Are we missing half of the viruses in the ocean?
- (2012) Grieg F Steward et al. ISME Journal
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The life of diatoms in the world's oceans
- (2009) E. Virginia Armbrust NATURE
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