The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis

Homeostasis of the Gram-negative cell envelope

(2021) Shreya Saha et al.   CURRENT OPINION IN MICROBIOLOGY

LD‐transpeptidases: the great unknown among the peptidoglycan cross‐linkers

(2021) Alena Aliashkevich et al.   FEBS Journal

The ChvG-ChvI and NtrY-NtrX Two-Component Systems Coordinately Regulate Growth of Caulobacter crescentus

(2021) Benjamin J. Stein et al.   JOURNAL OF BACTERIOLOGY

Discovery of a Diverse Set of Bacteria That Build Their Cell Walls without the Canonical Peptidoglycan Polymerase aPBP

(2021) Sharanjeet Atwal et al.   mBio

Promoter Architecture Differences among Alphaproteobacteria and Other Bacterial Taxa

(2021) Kevin S. Myers et al.   mSystems

The multifarious roles of Tol-Pal in Gram-negative bacteria

(2020) Joanna Szczepaniak et al.   FEMS MICROBIOLOGY REVIEWS

Regulation of peptidoglycan synthesis and remodelling

(2020) Alexander J. F. Egan et al.   NATURE REVIEWS MICROBIOLOGY

The Tol-Pal system is required for peptidoglycan-cleaving enzymes to complete bacterial cell division

(2020) Anastasiya A. Yakhnina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The lipoprotein Pal stabilises the bacterial outer membrane during constriction by a mobilisation-and-capture mechanism

(2020) Joanna Szczepaniak et al.   Nature Communications

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

(2020) Anton Hördt et al.   Frontiers in Microbiology

Tol-Pal System and Rgs Proteins Interact to Promote Unipolar Growth and Cell Division in Sinorhizobium meliloti

(2020) Elizaveta Krol et al.   mBio

Border Control: Regulating LPS Biogenesis

(2020) Randi L. Guest et al.   TRENDS IN MICROBIOLOGY

Bacterial Cell Wall Quality Control during Environmental Stress

(2020) Elizabeth A. Mueller et al.   mBio

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Agrobacterium tumefaciens divisome proteins regulate the transition from polar growth to cell division

(2019) Matthew Howell et al.   MOLECULAR MICROBIOLOGY

The Bradyrhizobium diazoefficiens two-component system NtrYX has a key role in symbiotic nitrogen fixation of soybean plants and cbb3 oxidase expression in bacteroids

(2019) María Florencia López et al.   PLANT AND SOIL

An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins

(2019) Sergio A Muñoz-Gómez et al.   eLife

The Complex Rcs Regulatory Cascade

(2018) Erin Wall et al.   Annual Review of Microbiology

Structural insights into the signalling mechanisms of two-component systems

(2018) Françoise Jacob-Dubuisson et al.   NATURE REVIEWS MICROBIOLOGY

Inhibitor of intramembrane protease RseP blocks the σEresponse causing lethal accumulation of unfolded outer membrane proteins

(2018) Anna Konovalova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Restricted Localization of Photosynthetic Intracytoplasmic Membranes (ICMs) in Multiple Genera of Purple Nonsulfur Bacteria

(2018) Breah LaSarre et al.   mBio

The outer membrane is an essential load-bearing element in Gram-negative bacteria

(2018) Enrique R. Rojas et al.   NATURE

A response regulator of the OmpR family is part of the regulatory network controlling the oxidative stress response of Rhodobacter sphaeroides

(2018) Zhiping Zhao et al.   Environmental Microbiology Reports

MtrA Response Regulator Controls Cell Division and Cell Wall Metabolism and Affects Susceptibility of Mycobacteria to the First Line Antituberculosis Drugs

(2018) Purushotham Gorla et al.   Frontiers in Microbiology

Peptidoglycan in obligate intracellular bacteria

(2017) Christian Otten et al.   MOLECULAR MICROBIOLOGY

Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli

(2017) Rahul Shrivastava et al.   MOLECULAR MICROBIOLOGY

The NtrY/NtrX System of Sinorhizobium meliloti GR4 Regulates Motility, EPS I Production, and Nitrogen Metabolism but Is Dispensable for Symbiotic Nitrogen Fixation

(2017) Nieves Calatrava-Morales et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Envelope Stress Responses: An Interconnected Safety Net

(2017) Marcin Grabowicz et al.   TRENDS IN BIOCHEMICAL SCIENCES

Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production

(2017) Kimberly C. Lemmer et al.   mBio

Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides

(2017) Brian T. Burger et al.   mSystems

Molecular Mechanisms of Two-Component Signal Transduction

(2016) Christopher P. Zschiedrich et al.   JOURNAL OF MOLECULAR BIOLOGY

MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis

(2016) Adrien Ducret et al.   Nature Microbiology

Essential Genome of the Metabolically Versatile Alphaproteobacterium Rhodopseudomonas palustris

(2015) Kieran B. Pechter et al.   JOURNAL OF BACTERIOLOGY

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

A cell wall damage response mediated by a sensor kinase/response regulator pair enables beta-lactam tolerance

(2015) Tobias Dörr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division

(2015) Andrew N Gray et al.   eLife

Biosynthesis and Export of Bacterial Lipopolysaccharides

(2014) Chris Whitfield et al.   Annual Review of Biochemistry

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers

(2014) Daniel L. Gall et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The Cpx Envelope Stress Response Modifies Peptidoglycan Cross-Linking via the l,d-Transpeptidase LdtD and the Novel Protein YgaU

(2014) Margarita Bernal-Cabas et al.   JOURNAL OF BACTERIOLOGY

The Sinorhizobium melilotintrXGene Is Involved in Succinoglycan Production, Motility, and Symbiotic Nodulation on Alfalfa

(2013) Dong Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of an ntrX Mutant of Neisseria gonorrhoeae Reveals a Response Regulator That Controls Expression of Respiratory Enzymes in Oxidase-Positive Proteobacteria

(2013) J. M. Atack et al.   JOURNAL OF BACTERIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

New rRNA Gene-Based Phylogenies of the Alphaproteobacteria Provide Perspective on Major Groups, Mitochondrial Ancestry and Phylogenetic Instability

(2013) Matteo P. Ferla et al.   PLoS One

DegS and RseP Homologous Proteases Are Involved in Singlet Oxygen Dependent Activation of RpoE in Rhodobacter sphaeroides

(2013) Aaron M. Nuss et al.   PLoS One

The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally

(2013) Dan M. Park et al.   PLoS Genetics

Evolution of Two-Component Signal Transduction Systems

(2012) Emily J. Capra et al.   Annual Review of Microbiology

The NtrY/X two-component system of Brucella spp. acts as a redox sensor and regulates the expression of nitrogen respiration enzymes

(2012) Mariela del Carmen Carrica et al.   MOLECULAR MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Polar growth in the Alphaproteobacterial order Rhizobiales

(2012) P. J. B. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses

(2012) Yann S. Dufour et al.   PLoS Genetics

Acid-Induced Type VI Secretion System Is Regulated by ExoR-ChvG/ChvI Signaling Cascade in Agrobacterium tumefaciens

(2012) Chih-Feng Wu et al.   PLoS Pathogens

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data

(2011) Sonja Althammer et al.   BIOINFORMATICS

A Statistical Framework for the Analysis of ChIP-Seq Data

(2011) Pei Fen Kuan et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

From the regulation of peptidoglycan synthesis to bacterial growth and morphology

(2011) Athanasios Typas et al.   NATURE REVIEWS MICROBIOLOGY

MochiView: versatile software for genome browsing and DNA motif analysis

(2010) Oliver R Homann et al.   BMC BIOLOGY

Regulation of Peptidoglycan Synthesis by Outer-Membrane Proteins

(2010) Athanasios Typas et al.   CELL

The Caulobacter Tol-Pal Complex Is Essential for Outer Membrane Integrity and the Positioning of a Polar Localization Factor

(2010) Y.-C. Yeh et al.   JOURNAL OF BACTERIOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Architecture of peptidoglycan: more data and more models

(2010) Waldemar Vollmer et al.   TRENDS IN MICROBIOLOGY

The Bacterial Cell Envelope

(2010) T. J. Silhavy et al.   Cold Spring Harbor Perspectives in Biology

Biological Insights from Structures of Two-Component Proteins

(2009) Rong Gao et al.   Annual Review of Microbiology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

AmpC  -Lactamases

(2009) G. A. Jacoby   CLINICAL MICROBIOLOGY REVIEWS

The Rcs Two-Component System Regulates Expression of Lysozyme Inhibitors and Is Induced by Exposure to Lysozyme

(2009) L. Callewaert et al.   JOURNAL OF BACTERIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane

(2009) J. C. Malinverni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Periplasmic Reducing System Protects Single Cysteine Residues from Oxidation

(2009) M. Depuydt et al.   SCIENCE

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Characterization of the Cpx Regulon in Escherichia coli Strain MC4100

(2008) N. L. Price et al.   JOURNAL OF BACTERIOLOGY

The Rcs Phosphorelay Is a Cell Envelope Stress Response Activated by Peptidoglycan Stress and Contributes to Intrinsic Antibiotic Resistance

(2008) M. E. Laubacher et al.   JOURNAL OF BACTERIOLOGY

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method

(2008) Lukas Burger et al.   Molecular Systems Biology

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

(2008) Anton Valouev et al.   NATURE METHODS