标题
A Bayesian approach to infer recombination patterns in coronaviruses
作者
关键词
-
出版物
Nature Communications
Volume 13, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-07-20
DOI
10.1038/s41467-022-31749-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical Reconstruction
- (2022) Anastasia Ignatieva et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229E
- (2021) Kathryn E Kistler et al. eLife
- Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie
- (2021) Ales Varabyou et al. GENETICS
- Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic
- (2021) Ben Jackson et al. CELL
- Recombinant SARS-CoV-2 Genomes Circulated at Low Levels Over The First Year of The Pandemic
- (2021) David VanInsberghe et al. Virus Evolution
- Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein
- (2020) Alexandra C. Walls et al. CELL
- A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein
- (2020) Hong Zhou et al. CURRENT BIOLOGY
- Epidemiology of Seasonal Coronaviruses: Establishing the Context for the Emergence of Coronavirus Disease 2019
- (2020) Sema Nickbakhsh et al. JOURNAL OF INFECTIOUS DISEASES
- Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins
- (2020) Tommy Tsan-Yuk Lam et al. NATURE
- The proximal origin of SARS-CoV-2
- (2020) Kristian G. Andersen et al. NATURE MEDICINE
- Emergence of SARS-CoV-2 through recombination and strong purifying selection
- (2020) Xiaojun Li et al. Science Advances
- Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses
- (2020) Nicola F. Müller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
- (2020) Maciej F. Boni et al. Nature Microbiology
- Recombination should not be an afterthought
- (2020) Russell Y. Neches et al. NATURE REVIEWS MICROBIOLOGY
- Cryptic transmission of SARS-CoV-2 in Washington state
- (2020) Trevor Bedford et al. SCIENCE
- Adaptive Metropolis-coupled MCMC for BEAST 2
- (2020) Nicola F. Müller et al. PeerJ
- Temporal signal and the phylodynamic threshold of SARS-CoV-2
- (2020) Sebastian Duchene et al. Virus Evolution
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
- (2020) Erik Volz et al. CELL
- Recombination events are concentrated in the spike protein region of Betacoronaviruses
- (2020) Louis-Marie Bobay et al. PLoS Genetics
- BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
- (2019) Remco Bouckaert et al. PLoS Computational Biology
- MERS-CoV spillover at the camel-human interface
- (2018) Gytis Dudas et al. eLife
- Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
- (2017) Magnus Bordewich et al. JOURNAL OF THEORETICAL BIOLOGY
- Inferring Ancestral Recombination Graphs from Bacterial Genomic Data
- (2016) Timothy G. Vaughan et al. GENETICS
- Reassortment in segmented RNA viruses: mechanisms and outcomes
- (2016) Sarah M. McDonald et al. NATURE REVIEWS MICROBIOLOGY
- Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses
- (2016) Shuo Su et al. TRENDS IN MICROBIOLOGY
- Inferring Ancestral Recombination Graphs from Bacterial Genomic Data
- (2016) Timothy G. Vaughan et al. GENETICS
- Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft
- (2016) Xing-Yi Ge et al. VIROLOGICA SINICA
- Maximum likelihood inference of reticulate evolutionary histories
- (2014) Yun Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates
- (2014) S. Duchene et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome-Wide Inference of Ancestral Recombination Graphs
- (2014) Matthew D. Rasmussen et al. PLoS Genetics
- Human APOBEC3 Induced Mutation of Human Immunodeficiency Virus Type-1 Contributes to Adaptation and Evolution in Natural Infection
- (2014) Eun-Young Kim et al. PLoS Pathogens
- New approaches for unravelling reassortment pathways
- (2013) Victoria Svinti et al. BMC EVOLUTIONARY BIOLOGY
- Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor
- (2013) Xing-Yi Ge et al. NATURE
- The Genomic Rate of Molecular Adaptation of the Human Influenza A Virus
- (2011) Samir Bhatt et al. MOLECULAR BIOLOGY AND EVOLUTION
- Why do RNA viruses recombine?
- (2011) Etienne Simon-Loriere et al. NATURE REVIEWS MICROBIOLOGY
- Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences
- (2010) X. Didelot et al. GENETICS
- Detecting natural selection in RNA virus populations using sequence summary statistics
- (2009) Samir Bhatt et al. INFECTION GENETICS AND EVOLUTION
- On incomplete sampling under birth–death models and connections to the sampling-based coalescent
- (2009) Tanja Stadler JOURNAL OF THEORETICAL BIOLOGY
- Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework
- (2009) Erik W. Bloomquist et al. SYSTEMATIC BIOLOGY
- Bayesian Phylogeography Finds Its Roots
- (2009) Philippe Lemey et al. PLoS Computational Biology
- Evaluation of time profile reconstruction from complex two-color microarray designs
- (2008) Ana C Fierro et al. BMC BIOINFORMATICS
- Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
- (2008) Chen Meng et al. THEORETICAL POPULATION BIOLOGY
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