A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Recent insights into peroxisome biogenesis and associated diseases

(2020) Yukio Fujiki et al.   JOURNAL OF CELL SCIENCE

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

(2020) Jiaming Li et al.   NATURE METHODS

UCSF ChimeraX : Structure visualization for researchers, educators, and developers

(2020) Eric F. Pettersen et al.   PROTEIN SCIENCE

Current Advances in Protein Import into Peroxisomes

(2019) Thomas Walter et al.   PROTEIN JOURNAL

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

Structure and drug resistance of the Plasmodium falciparum transporter PfCRT

(2019) Jonathan Kim et al.   NATURE

Current Developments in Coot for Macromolecular Model Building of Electron Cryo‐microscopy and Crystallographic Data

(2019) Ana Casañal et al.   PROTEIN SCIENCE

Mechanistic insights into ER-associated protein degradation

(2018) Xudong Wu et al.   CURRENT OPINION IN CELL BIOLOGY

Insights into the Role of the Peroxisomal Ubiquitination Machinery in Pex13p Degradation in the Yeast Hansenula polymorpha

(2018) Xin Chen et al.   JOURNAL OF MOLECULAR BIOLOGY

The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading

(2018) Brooke M. Gardner et al.   Nature Communications

Peroxisome biogenesis, membrane contact sites, and quality control

(2018) Jean‐Claude Farré et al.   EMBO REPORTS

Structure of the post-translational protein translocation machinery of the ER membrane

(2018) Xudong Wu et al.   NATURE

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Reconstitution of the tubular endoplasmic reticulum network with purified components

(2017) Robert E. Powers et al.   NATURE

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

(2017) Yong Zi Tan et al.   NATURE METHODS

Crystal structure of a substrate-engaged SecY protein-translocation channel

(2016) Long Li et al.   NATURE

Conformational Chaperones for Structural Studies of Membrane Proteins Using Antibody Phage Display with Nanodiscs

(2016) Pawel K. Dominik et al.   STRUCTURE

Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways

(2016) William C. DeLoache et al.   Nature Communications

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Structure of the Sec61 channel opened by a signal sequence

(2015) R. M. Voorhees et al.   SCIENCE

Distinct Modes of Ubiquitination of Peroxisome-targeting Signal Type 1 (PTS1) Receptor Pex5p Regulate PTS1 Protein Import

(2014) Kanji Okumoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

Collaboration gets the most out of software

(2013) Andrew Morin et al.   eLife

The exportomer: the peroxisomal receptor export machinery

(2012) Harald W. Platta et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The RING-type ubiquitin ligases Pex2p, Pex10p and Pex12p form a heteromeric complex that displays enhanced activity in an ubiquitin conjugating enzyme-selective manner

(2012) Fouzi El Magraoui et al.   FEBS Journal

Structure of an E3:E2∼Ub Complex Reveals an Allosteric Mechanism Shared among RING/U-box Ligases

(2012) Jonathan N. Pruneda et al.   MOLECULAR CELL

Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis

(2012) Anna Plechanovová et al.   NATURE

Template-based protein structure modeling using the RaptorX web server

(2012) Morten Källberg et al.   Nature Protocols

BIRC7–E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer

(2012) Hao Dou et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Insights into ubiquitin-conjugating enzyme/ co-activator interactions from the structure of the Pex4p:Pex22p complex

(2011) Chris Williams et al.   EMBO JOURNAL

Allosteric control of ligand-binding affinity using engineered conformation-specific effector proteins

(2011) Shahir S Rizk et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genetic classification and mutational spectrum of more than 600 patients with a Zellweger syndrome spectrum disorder

(2010) Merel S. Ebberink et al.   HUMAN MUTATION

The peroxisomal importomer constitutes a large and highly dynamic pore

(2010) Michael Meinecke et al.   NATURE CELL BIOLOGY

Peroxisomal protein import and ERAD: variations on a common theme

(2010) Wolfgang Schliebs et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

RING Domain E3 Ubiquitin Ligases

(2009) Raymond J. Deshaies et al.   Annual Review of Biochemistry

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Pex2 and Pex12 Function as Protein-Ubiquitin Ligases in Peroxisomal Protein Import

(2009) H. W. Platta et al.   MOLECULAR AND CELLULAR BIOLOGY

Pex10p functions as an E3 ligase for the Ubc4p-dependent ubiquitination of Pex5p

(2008) Chris Williams et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Members of the E2D (UbcH5) Family Mediate the Ubiquitination of the Conserved Cysteine of Pex5p, the Peroxisomal Import Receptor

(2008) Cláudia P. Grou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY