Drug-Target Interaction Prediction Using Multi-Head Self-Attention and Graph Attention Network

Improved protein structure prediction using potentials from deep learning

(2020) Andrew W. Senior et al.   NATURE

Learning to Predict Drug Target Interaction From Missing Not at Random Labels

(2019) Chen Lin et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

(2019) Ingoo Lee et al.   PLoS Computational Biology

Advances in protein structure prediction and design

(2019) Brian Kuhlman et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Compound-protein Interaction Prediction with End-to-end Learning of Neural Networks for Graphs and Sequences

(2018) Masashi Tsubaki et al.   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Identification of drug-target interaction by a random walk with restart method on an interactome network

(2018) Ingoo Lee et al.   BMC BIOINFORMATICS

Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey

(2018) Ali Ezzat et al.   BRIEFINGS IN BIOINFORMATICS

DrugE-Rank: improving drug–target interaction prediction of new candidate drugs or targets by ensemble learning to rank

(2016) Qingjun Yuan et al.   BIOINFORMATICS

CGBVS-DNN: Prediction of Compound-protein Interactions Based on Deep Learning

(2016) Masatoshi Hamanaka et al.   Molecular Informatics

Improving compound–protein interaction prediction by building up highly credible negative samples

(2015) Hui Liu et al.   BIOINFORMATICS

Predicting drug-target interactions using restricted Boltzmann machines

(2013) Yuhao Wang et al.   BIOINFORMATICS

Similarity-based machine learning methods for predicting drug–target interactions: a brief review

(2013) Hao Ding et al.   BRIEFINGS IN BIOINFORMATICS

Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile

(2013) Twan van Laarhoven et al.   PLoS One

Prediction of chemical–protein interactions: multitarget-QSAR versus computational chemogenomic methods

(2012) Feixiong Cheng et al.   Molecular BioSystems

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

(2010) Zheng Xia et al.   BMC Systems Biology

Supervised prediction of drug–target interactions using bipartite local models

(2009) Kevin Bleakley et al.   BIOINFORMATICS