Interpreting Brain Biomarkers: Challenges and solutions in interpreting machine learning-based predictive neuroimaging

Promises and pitfalls of deep neural networks in neuroimaging-based psychiatric research

(2021) Fabian Eitel et al.   EXPERIMENTAL NEUROLOGY

A neuroimaging biomarker for sustained experimental and clinical pain

(2021) Jae-Joong Lee et al.   NATURE MEDICINE

Neuroimaging-based Individualized Prediction of Cognition and Behavior for Mental Disorders and Health: Methods and Promises

(2020) Jing Sui et al.   BIOLOGICAL PSYCHIATRY

Individual Variation in Functional Topography of Association Networks in Youth

(2020) Zaixu Cui et al.   NEURON

Functional connectivity predicts changes in attention observed across minutes, days, and months

(2020) Monica D. Rosenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bootstrapping promotes the RSFC‐behavior associations: An application of individual cognitive traits prediction

(2020) Lijiang Wei et al.   HUMAN BRAIN MAPPING

Toward a unified framework for interpreting machine-learning models in neuroimaging

(2020) Lada Kohoutová et al.   Nature Protocols

Optimization of energy state transition trajectory supports the development of executive function during youth

(2020) Zaixu Cui et al.   eLife

Structural Brain Architectures Match Intrinsic Functional Networks and Vary across Domains: A Study from 15 000+ Individuals

(2020) Na Luo et al.   CEREBRAL CORTEX

Connectome-based models can predict early symptom improvement in major depressive disorder

(2020) Yumeng Ju et al.   JOURNAL OF AFFECTIVE DISORDERS

Prediction of trust propensity from intrinsic brain morphology and functional connectome

(2020) Chunliang Feng et al.   HUMAN BRAIN MAPPING

The individualized prediction of cognitive test scores in mild cognitive impairment using structural and functional connectivity features

(2020) Junhong Yu et al.   NEUROIMAGE

Common and unique multimodal covarying patterns in autism spectrum disorder subtypes

(2020) Shile Qi et al.   Molecular Autism

Interpreting encoding and decoding models

(2019) Nikolaus Kriegeskorte et al.   CURRENT OPINION IN NEUROBIOLOGY

Exploration, Inference, and Prediction in Neuroscience and Biomedicine

(2019) Danilo Bzdok et al.   TRENDS IN NEUROSCIENCES

Multimodal data revealed different neurobiological correlates of intelligence between males and females

(2019) Rongtao Jiang et al.   Brain Imaging and Behavior

Gender Differences in Connectome-based Predictions of Individualized Intelligence Quotient and Sub-domain Scores

(2019) Rongtao Jiang et al.   CEREBRAL CORTEX

Reconstruction of behavior-relevant individual brain activity: an individualized fMRI study

(2019) Dongya Wu et al.   Science China-Life Sciences

Layer-Wise Relevance Propagation for Explaining Deep Neural Network Decisions in MRI-Based Alzheimer's Disease Classification

(2019) Moritz Böhle et al.   Frontiers in Aging Neuroscience

Prediction of neurocognition in youth from resting state fMRI

(2019) Chandra Sripada et al.   MOLECULAR PSYCHIATRY

Brain Connectome Mapping of Complex Human Traits and Their Polygenic Architecture Using Machine Learning

(2019) Luigi A. Maglanoc et al.   BIOLOGICAL PSYCHIATRY

The Application of Connectome-Based Predictive Modeling to the Maternal Brain: Implications for Mother–Infant Bonding

(2019) Helena J V Rutherford et al.   CEREBRAL CORTEX

Dissociable neural substrates of opioid and cocaine use identified via connectome-based modelling

(2019) Sarah D. Lichenstein et al.   MOLECULAR PSYCHIATRY

Combining multiple connectomes improves predictive modeling of phenotypic measures

(2019) Siyuan Gao et al.   NEUROIMAGE

Task-induced brain connectivity promotes the detection of individual differences in brain-behavior relationships

(2019) Rongtao Jiang et al.   NEUROIMAGE

Establishment of Best Practices for Evidence for Prediction

(2019) Russell A. Poldrack et al.   JAMA Psychiatry

Analyzing Neuroimaging Data Through Recurrent Deep Learning Models

(2019) Armin W. Thomas et al.   Frontiers in Neuroscience

Toward Addiction Prediction: An Overview of Cross-Validated Predictive Modeling Findings and Considerations for Future Neuroimaging Research

(2019) Sarah W. Yip et al.   Biological Psychiatry-Cognitive Neuroscience and Neuroimaging

Machine Learning With Neuroimaging: Evaluating Its Applications in Psychiatry

(2019) Ashley N. Nielsen et al.   Biological Psychiatry-Cognitive Neuroscience and Neuroimaging

Evaluating the Prediction of Brain Maturity From Functional Connectivity After Motion Artifact Denoising

(2018) Ashley N Nielsen et al.   CEREBRAL CORTEX

Connectome-based predictive modeling of attention: Comparing different functional connectivity features and prediction methods across datasets

(2018) Kwangsun Yoo et al.   NEUROIMAGE

Robust prediction of individual creative ability from brain functional connectivity

(2018) Roger E. Beaty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multivariate resting-state functional connectivity predicts response to cognitive behavioral therapy in obsessive–compulsive disorder

(2018) Nicco Reggente et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction complements explanation in understanding the developing brain

(2018) Monica D. Rosenberg et al.   Nature Communications

Task-induced brain state manipulation improves prediction of individual traits

(2018) Abigail S. Greene et al.   Nature Communications

Representation, Pattern Information, and Brain Signatures: From Neurons to Neuroimaging

(2018) Philip A. Kragel et al.   NEURON

A distributed brain network predicts general intelligence from resting-state human neuroimaging data

(2018) Julien Dubois et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multimodal neuromarkers in schizophrenia via cognition-guided MRI fusion

(2018) Jing Sui et al.   Nature Communications

Individual-specific functional connectivity markers track dimensional and categorical features of psychotic illness

(2018) Danhong Wang et al.   MOLECULAR PSYCHIATRY

Individualized prediction of dispositional worry using white matter connectivity

(2018) Chunliang Feng et al.   PSYCHOLOGICAL MEDICINE

Chronnectome fingerprinting: Identifying individuals and predicting higher cognitive functions using dynamic brain connectivity patterns

(2017) Jin Liu et al.   HUMAN BRAIN MAPPING

Multi-polygenic score approach to trait prediction

(2017) E Krapohl et al.   MOLECULAR PSYCHIATRY

Building better biomarkers: brain models in translational neuroimaging

(2017) Choong-Wan Woo et al.   NATURE NEUROSCIENCE

Using connectome-based predictive modeling to predict individual behavior from brain connectivity

(2017) Xilin Shen et al.   Nature Protocols

Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls

(2017) Mohammad R. Arbabshirani et al.   NEUROIMAGE

SMRI Biomarkers Predict Electroconvulsive Treatment Outcomes: Accuracy with Independent Data Sets

(2017) Rongtao Jiang et al.   NEUROPSYCHOPHARMACOLOGY

Using deep learning to investigate the neuroimaging correlates of psychiatric and neurological disorders: Methods and applications

(2017) Sandra Vieira et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Relative importance of factors influencing building energy in urban environment

(2016) Wei Tian et al.   ENERGY

Methylphenidate Modulates Functional Network Connectivity to Enhance Attention

(2016) M. D. Rosenberg et al.   JOURNAL OF NEUROSCIENCE

The search for imaging biomarkers in psychiatric disorders

(2016) Anissa Abi-Dargham et al.   NATURE MEDICINE

Resting-state connectivity biomarkers define neurophysiological subtypes of depression

(2016) Andrew T Drysdale et al.   NATURE MEDICINE

Disruptions of network connectivity predict impairment in multiple behavioral domains after stroke

(2016) Joshua Sarfaty Siegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Task-free MRI predicts individual differences in brain activity during task performance

(2016) I. Tavor et al.   SCIENCE

Building a Science of Individual Differences from fMRI

(2016) Julien Dubois et al.   TRENDS IN COGNITIVE SCIENCES

A neuromarker of sustained attention from whole-brain functional connectivity

(2015) Monica D Rosenberg et al.   NATURE NEUROSCIENCE

Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity

(2015) Emily S Finn et al.   NATURE NEUROSCIENCE

When Optimism Hurts: Inflated Predictions in Psychiatric Neuroimaging

(2013) Robert Whelan et al.   BIOLOGICAL PSYCHIATRY

On the interpretation of weight vectors of linear models in multivariate neuroimaging

(2013) Stefan Haufe et al.   NEUROIMAGE

High-Dimensional Regression and Variable Selection Using CAR Scores

(2011) Verena Zuber et al.   Statistical Applications in Genetics and Molecular Biology

Prediction of Individual Brain Maturity Using fMRI

(2010) Nico U. F. Dosenbach et al.   SCIENCE