Uncovering 1058 Novel Human Enteric DNA Viruses Through Deep Long-Read Third-Generation Sequencing and Their Clinical Impact
出版年份 2022 全文链接
标题
Uncovering 1058 Novel Human Enteric DNA Viruses Through Deep Long-Read Third-Generation Sequencing and Their Clinical Impact
作者
关键词
-
出版物
GASTROENTEROLOGY
Volume -, Issue -, Pages -
出版商
Elsevier BV
发表日期
2022-06-06
DOI
10.1053/j.gastro.2022.05.048
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains
- (2021) Adam J. Hockenberry et al. PeerJ
- Comparison of PCR versus PCR-Free DNA Library Preparation for Characterising the Human Faecal Virome
- (2021) Shen-Yuan Hsieh et al. Viruses-Basel
- Clades of huge phages from across Earth’s ecosystems
- (2020) Basem Al-Shayeb et al. NATURE
- The stepwise assembly of the neonatal virome is modulated by breastfeeding
- (2020) Guanxiang Liang et al. NATURE
- Metaviral SPAdes: assembly of viruses from metagenomic data
- (2020) Dmitry Antipov et al. BIOINFORMATICS
- VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
- (2020) Kristopher Kieft et al. Microbiome
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
- (2020) Ann C. Gregory et al. Cell Host & Microbe
- Seeker: alignment-free identification of bacteriophage genomes by deep learning
- (2020) Noam Auslander et al. NUCLEIC ACIDS RESEARCH
- Database resources of the National Center for Biotechnology Information
- (2020) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- Megaphages infect Prevotella and variants are widespread in gut microbiomes
- (2019) Audra E. Devoto et al. Nature Microbiology
- Choice of assembly software has a critical impact on virome characterisation
- (2019) Thomas D. S. Sutton et al. Microbiome
- Gut mucosal virome alterations in ulcerative colitis
- (2019) Tao Zuo et al. GUT
- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
- Complete genome sequences of pooled genomic DNA from 10 marine bacteria using PacBio long-read sequencing
- (2019) Weizhi Song et al. Marine Genomics
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands
- (2019) Joanna Warwick-Dugdale et al. PeerJ
- Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
- (2019) Denis Bertrand et al. NATURE BIOTECHNOLOGY
- PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning
- (2019) Zhencheng Fang et al. GigaScience
- Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
- (2019) Adam G. Clooney et al. Cell Host & Microbe
- Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes
- (2018) Geicho Nakatsu et al. GASTROENTEROLOGY
- Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
- (2018) Marcos Parras-Moltó et al. Microbiome
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Viral communities of the human gut: metagenomic analysis of composition and dynamics
- (2017) Varun Aggarwala et al. Mobile DNA
- Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
- (2017) Simon Roux et al. PeerJ
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
- (2017) Jie Ren et al. Microbiome
- MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
- (2016) Dinghua Li et al. METHODS
- Lytic to temperate switching of viral communities
- (2016) B. Knowles et al. NATURE
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Revised Estimates for the Number of Human and Bacteria Cells in the Body
- (2016) Ron Sender et al. PLOS BIOLOGY
- Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing
- (2016) Emily Vogtmann et al. PLoS One
- Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
- (2015) Simon Roux et al. eLife
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- Potential of fecal microbiota for early-stage detection of colorectal cancer
- (2014) G. Zeller et al. Molecular Systems Biology
- NCBI Viral Genomes Resource
- (2014) J. Rodney Brister et al. NUCLEIC ACIDS RESEARCH
- Characterization of virus-like particles associated with the human faecal and caecal microbiota
- (2014) Lesley Hoyles et al. RESEARCH IN MICROBIOLOGY
- Study of the Viral and Microbial Communities Associated With Crohn’s Disease: A Metagenomic Approach
- (2013) Vicente Pérez-Brocal et al. Clinical and Translational Gastroenterology
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Geminiviruses: a tale of a plasmid becoming a virus
- (2009) Mart Krupovic et al. BMC EVOLUTIONARY BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started