Life in a dark biosphere: a review of circadian physiology in “arrhythmic” environments

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

(2016) Junxing Yang et al.   BMC BIOLOGY

The effect of carbon dioxide on growth and metabolism in juvenile turbot Scophthalmus maximus L.

(2015) Kevin Torben Stiller et al.   AQUACULTURE

Submersible- and lander-observed community patterns in the Mariana and New Britain trenches: Influence of productivity and depth on epibenthic and scavenging communities

(2015) Natalya D. Gallo et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function

(2015) Wayne I.L. Davies et al.   GENOME RESEARCH

Comparison of light, food, and temperature as environmental synchronizers of the circadian rhythm of activity in mice

(2015) Roberto Refinetti   Journal of Physiological Sciences

NAD+-SIRT1 control of H3K4 trimethylation through circadian deacetylation of MLL1

(2015) Lorena Aguilar-Arnal et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Persistence, Entrainment, and Function of Circadian Rhythms in Polar Vertebrates

(2015) Cory T. Williams et al.   PHYSIOLOGY

Natural selection against a circadian clock gene mutation in mice

(2015) Kamiel Spoelstra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In the dark: A review of ecosystem processes during the Arctic polar night

(2015) Jørgen Berge et al.   PROGRESS IN OCEANOGRAPHY

NAD+-SIRT1 control of H3K4 trimethylation through circadian deacetylation of MLL1

(2015) Lorena Aguilar-Arnal et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Metabolic and Nontranscriptional Circadian Clocks: Eukaryotes

(2014) Akhilesh B. Reddy et al.   Annual Review of Biochemistry

Circadian Clock, Cancer, and Chemotherapy

(2014) Aziz Sancar et al.   BIOCHEMISTRY

Improving the accuracy of expression data analysis in time course experiments using resampling

(2014) Wencke Walter et al.   BMC BIOINFORMATICS

Revealing a Circadian Clock in Captive Arctic-Breeding Songbirds, Lapland Longspurs (Calcarius lapponicus), under Constant Illumination

(2014) Noah T. Ashley et al.   JOURNAL OF BIOLOGICAL RHYTHMS

From physiology to physics: are we recognizing the flexibility of biologging tools?

(2014) N. L. Payne et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Food consumption of five deep-sea fishes in the Balearic Basin (western Mediterranean Sea): are there daily feeding rhythms in fishes living below 1000 m?

(2014) L. Modica et al.   JOURNAL OF FISH BIOLOGY

Circadian Rhythmicity and Light Sensitivity of the Zebrafish Brain

(2014) Helen A. Moore et al.   PLoS One

Eyeless Mexican Cavefish Save Energy by Eliminating the Circadian Rhythm in Metabolism

(2014) Damian Moran et al.   PLoS One

The cavefish genome reveals candidate genes for eye loss

(2014) Suzanne E. McGaugh et al.   Nature Communications

Glucose Sensor O-GlcNAcylation Coordinates with Phosphorylation to Regulate Circadian Clock

(2013) Krista Kaasik et al.   Cell Metabolism

On the Adaptive Significance of Circadian Clocks for Their Owners

(2013) Koustubh M. Vaze et al.   CHRONOBIOLOGY INTERNATIONAL

The circadian clock and cell cycle: interconnected biological circuits

(2013) Selma Masri et al.   CURRENT OPINION IN CELL BIOLOGY

Real-time in vivo monitoring of circadian E-box enhancer activity: A robust and sensitive zebrafish reporter line for developmental, chemical and neural biology of the circadian clock

(2013) Meltem Weger et al.   DEVELOPMENTAL BIOLOGY

Biological Clocks and Visual Systems in Cave-Adapted Animals at the Dawn of Speleogenomics

(2013) M. Friedrich   INTEGRATIVE AND COMPARATIVE BIOLOGY

Metabolism and the Circadian Clock Converge

(2013) Kristin Eckel-Mahan et al.   PHYSIOLOGICAL REVIEWS

Casein Kinase 1δ Activity: A Key Element in the Zebrafish Circadian Timing System

(2013) Sima Smadja Storz et al.   PLoS One

When the sun never sets: diverse activity rhythms under continuous daylight in free-living arctic-breeding birds

(2013) S. S. Steiger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of phototransduction, vertebrate photoreceptors and retina

(2013) Trevor D. Lamb   PROGRESS IN RETINAL AND EYE RESEARCH

Eye evolution and its functional basis

(2013) DAN-E. NILSSON   VISUAL NEUROSCIENCE

Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field

(2013) Andrew Beale et al.   Nature Communications

Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus)

(2012) Martina Bradic et al.   BMC EVOLUTIONARY BIOLOGY

The complex origin of Astyanax cavefish

(2012) Joshua B Gross   BMC EVOLUTIONARY BIOLOGY

(Re)inventing the Circadian Feedback Loop

(2012) Steven A. Brown et al.   DEVELOPMENTAL CELL

Peroxiredoxins are conserved markers of circadian rhythms

(2012) Rachel S. Edgar et al.   NATURE

Altered Rest-Activity Patterns Evolve via Circadian Independent Mechanisms in Cave Adapted Balitorid Loaches

(2012) Erik R. Duboué et al.   PLoS One

Field and Laboratory Studies Provide Insights into the Meaning of Day-Time Activity in a Subterranean Rodent (Ctenomys aff. knighti), the Tuco-Tuco

(2012) Barbara M. Tomotani et al.   PLoS One

Evolution and Functional Characterisation of Melanopsins in a Deep-Sea Chimaera (Elephant Shark, Callorhinchus milii)

(2012) Wayne I. L. Davies et al.   PLoS One

Coordination of the transcriptome and metabolome by the circadian clock

(2012) K. L. Eckel-Mahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of time-control mechanisms in subterranean organisms: cave fishes under light-dark cycles (Teleostei: Siluriformes, Characiformes)

(2011) E. Trajano et al.   BIOLOGICAL RHYTHM RESEARCH

Crosstalk between Components of Circadian and Metabolic Cycles in Mammals

(2011) Gad Asher et al.   Cell Metabolism

Functional diversity of melanopsins and their global expression in the teleost retina

(2011) Wayne I. L. Davies et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Immortalized cell lines for real-time analysis of circadian pacemaker and peripheral oscillator properties

(2011) Yuhua F. Farnell et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Phototransduction and clock gene expression in the troglobiont beetle Ptomaphagus hirtus of Mammoth cave

(2011) M. Friedrich et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Circadian rhythms persist without transcription in a eukaryote

(2011) John S. O’Neill et al.   NATURE

Circadian clocks in human red blood cells

(2011) John S. O’Neill et al.   NATURE

Circadian rhythms in metabolic variables in Caenorhabditis elegans

(2011) María Laura Migliori et al.   PHYSIOLOGY & BEHAVIOR

A Blind Circadian Clock in Cavefish Reveals that Opsins Mediate Peripheral Clock Photoreception

(2011) Nicola Cavallari et al.   PLOS BIOLOGY

Circadian clocks and cell division

(2010) Carl Hirschie Johnson   CELL CYCLE

A Circadian Clock Is Not Required in an Arctic Mammal

(2010) Weiqun Lu et al.   CURRENT BIOLOGY

Entrainment of Circadian Rhythm by Ambient Temperature Cycles in Mice

(2010) Roberto Refinetti   JOURNAL OF BIOLOGICAL RHYTHMS

The precision of video and photocell tracking systems and the elimination of tracking errors with infrared backlighting

(2010) Jeremy D. Bailoo et al.   JOURNAL OF NEUROSCIENCE METHODS

Coupling governs entrainment range of circadian clocks

(2010) Ute Abraham et al.   Molecular Systems Biology

Temperature as a Universal Resetting Cue for Mammalian Circadian Oscillators

(2010) E. D. Buhr et al.   SCIENCE

Comparative study on free-running locomotor activity circadian rhythms in Brazilian subterranean fishes with different degrees of specialization to the hypogean life (Teleostei: Siluriformes; Characiformes)

(2009) E. Trajano et al.   BIOLOGICAL RHYTHM RESEARCH

Circadian Pattern of Wheel‐Running Activity of a South American Subterranean Rodent (Ctenomys cf knightii)

(2009) Verónica Sandra Valentinuzzi et al.   CHRONOBIOLOGY INTERNATIONAL

Evidence for the adaptive significance of circadian rhythms

(2009) Shai Yerushalmi et al.   ECOLOGY LETTERS

Persistent diel melatonin rhythmicity during the Arctic summer in free-living willow warblers

(2009) Bengt Silverin et al.   HORMONES AND BEHAVIOR

Temperature Entrainment of Drosophila's Circadian Clock Involves the Gene nocte and Signaling from Peripheral Sensory Tissues to the Brain

(2009) Hana Sehadova et al.   NEURON

Timing of Locomotor Activity Circadian Rhythms in Caenorhabditis elegans

(2009) Sergio H. Simonetta et al.   PLoS One

Circadian Control of the NAD+ Salvage Pathway by CLOCK-SIRT1

(2009) Y. Nakahata et al.   SCIENCE

Circadian Clock Feedback Cycle Through NAMPT-Mediated NAD+ Biosynthesis

(2009) K. M. Ramsey et al.   SCIENCE

Post-translational modifications in circadian rhythms

(2009) Arun Mehra et al.   TRENDS IN BIOCHEMICAL SCIENCES

Circadian rhythm disorganization produces profound cardiovascular and renal disease in hamsters

(2008) Tami A. Martino et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies

(2008) Claudia Ornelas-García et al.   BMC EVOLUTIONARY BIOLOGY

The Meter of Metabolism

(2008) Carla B. Green et al.   CELL

The NAD+-Dependent Deacetylase SIRT1 Modulates CLOCK-Mediated Chromatin Remodeling and Circadian Control

(2008) Yasukazu Nakahata et al.   CELL

SIRT1 Regulates Circadian Clock Gene Expression through PER2 Deacetylation

(2008) Gad Asher et al.   CELL

Genetic Components of the Circadian Clock Regulate Thrombogenesis In Vivo

(2008) Elizabeth J. Westgate et al.   CIRCULATION

Molecular phylogeny of the blind cavefish Phreatichthys andruzzii and Garra barreimiae within the family Cyprinidae

(2008) Licia Colli et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Comparative genomic analysis of teleost fish bmal genes

(2008) Han Wang   GENETICA

Comparative Analysis of Period Genes in Teleost Fish Genomes

(2008) Han Wang   JOURNAL OF MOLECULAR EVOLUTION

Comparative analysis of teleost fish genomes reveals preservation of different ancient clock duplicates in different fishes

(2008) Han Wang   Marine Genomics

Dual Modification of BMAL1 by SUMO2/3 and Ubiquitin Promotes Circadian Activation of the CLOCK/BMAL1 Complex

(2008) J. Lee et al.   MOLECULAR AND CELLULAR BIOLOGY

Setting Clock Speed in Mammals: The CK1ɛ tau Mutation in Mice Accelerates Circadian Pacemakers by Selectively Destabilizing PERIOD Proteins

(2008) Qing-Jun Meng et al.   NEURON

Redundant Function of REV-ERBα and β and Non-Essential Role for Bmal1 Cycling in Transcriptional Regulation of Intracellular Circadian Rhythms

(2008) Andrew C. Liu et al.   PLoS Genetics

Melanopsin: an exciting photopigment

(2007) Mark W. Hankins et al.   TRENDS IN NEUROSCIENCES