Transcriptomic and Histological Analysis of the Greentail Prawn ( Metapenaeus bennettae ) Following Light Crude Oil Exposure

Establishment of infection mode and Penaeus monodon hemocytes transcriptomics analysis under decapod iridescent virus 1 (DIV1) challenge

(2021) Zihao He et al.   AQUACULTURE

Effects of nonylphenol exposure on histological changes, apoptosis and time-course transcriptome in gills of white shrimp Litopenaeus vannamei

(2021) Hui Guo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative transcriptome analysis of the gills and hepatopancreas from Macrobrachium rosenbergii exposed to the heavy metal Cadmium (Cd2+)

(2021) Xue Liu et al.   Scientific Reports

Comparative analysis of transcriptomes from different coloration of Chinese mitten crab Eriocheir sinensis

(2020) Yingying Zhao et al.   FISH & SHELLFISH IMMUNOLOGY

Long-Term Ecological Impacts from Oil Spills: Comparison of Exxon Valdez, Hebei Spirit, and Deepwater Horizon

(2020) Mace G. Barron et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Beyond thresholds: a holistic approach to impact assessment is needed to enable accurate predictions of environmental risk from oil spills

(2020) Sharon E. Hook   Integrated Environmental Assessment and Management

Immune toxicity of phenanthrene and its combined effects of white spot syndrome virus on the survival of kuruma shrimp (Penaeus Japonicus)

(2020) Mana Ito et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

History of ectonucleotidases and their role in purinergic signaling

(2020) Herbert Zimmermann   BIOCHEMICAL PHARMACOLOGY

Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps

(2019) Jiao Cheng et al.   BMC GENOMICS

Biochemical and morphological responses in Ucides cordatus (Crustacea, Decapoda) as indicators of contamination status in mangroves and port areas from northern Brazil

(2019) Raimunda Nonata Fortes Carvalho Neta et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome – identification of stress response and detoxification transcripts

(2019) Emily K. Armstrong et al.   Marine Genomics

Cadmium-induced oxidative stress, histopathology, and transcriptome changes in the hepatopancreas of freshwater crayfish (Procambarus clarkii)

(2019) Yu Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

C-type lectin response to bacterial infection and ammonia nitrogen stress in tiger shrimp (Penaeus monodon)

(2019) Yukai Qin et al.   FISH & SHELLFISH IMMUNOLOGY

Ammonia toxicity in the mud crab (Scylla paramamosain): The mechanistic insight from physiology to transcriptome analysis

(2019) Chang-Hong Cheng et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Characterizing Crude Oil Toxicity to Early-Life Stage Fish Based On a Complex Mixture: Are We Making Unsupported Assumptions?

(2019) James P. Meador et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Hepatobiliary Analyses Suggest Chronic PAH Exposure in Hakes ( Urophycis spp.) Following the Deepwater Horizon Oil Spill

(2019) Rachel E. Struch et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Associations between chronic exposure to polycyclic aromatic hydrocarbons and health indices in Gulf of Mexico Tilefish ( Lopholatilus chamaeleonticeps ) post‐ Deepwater Horizon

(2019) Susan M. Snyder et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Differentially expressed genes of the shrimp Marsupenaeus japonicus in response to infection by white spot syndrome virus or Vibrio alginolyticus

(2019) Qingri Jin et al.   FISH & SHELLFISH IMMUNOLOGY

Gill transcriptome alterations in Macrobrachium rosenbergii under copper exposure

(2019) Hui Guo et al.   CHEMOSPHERE

Effect of ammonia stress on immune variables of Pacific white shrimp Penaeus vannamei under varying levels of pH and susceptibility to white spot syndrome virus

(2019) Sreekakula A. Kathyayani et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Transcriptome analysis of oriental river Prawn(Macrobrachium nipponense)Hepatopancreas in response to ammonia exposure

(2019) Jielun Yu et al.   FISH & SHELLFISH IMMUNOLOGY

Effects of ammonia stress on the hemocytes of the Pacific white shrimp Litopenaeus vannamei

(2019) Fei Liu et al.   CHEMOSPHERE

Identification of neuropeptides from eyestalk transcriptome profiling analysis of female oriental river prawn (Macrobrachium nipponense) under hypoxia and reoxygenation conditions

(2019) Shengming Sun et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Toxicogenomic responses of low level anticancer drug exposures in Daphnia magna

(2018) Chiara Russo et al.   AQUATIC TOXICOLOGY

Adaptation to the deep-sea hydrothermal vents and cold seeps: Insights from the transcriptomes of Alvinocaris longirostris in both environments

(2018) Min Hui et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Identification of a C-type lectin possessing both antibacterial and antiviral activities from red swamp crayfish

(2018) Xiao-Wen Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptomic, lipid, and histological profiles suggest changes in health in fish from a pesticide hot spot

(2018) Sharon E. Hook et al.   MARINE ENVIRONMENTAL RESEARCH

Transcriptomic responses of the freshwater snail ( Parafossarulus striatulus ) following dietary exposure to cyanobacteria

(2018) Fei Qiao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Growth, energy metabolism and transcriptomic responses in Chinese mitten crab (Eriocheir sinensis) to benzo[α]pyrene (BaP) toxicity

(2018) Na Yu et al.   AQUATIC TOXICOLOGY

Monitoring sublethal changes in fish physiology following exposure to a light, unweathered crude oil

(2018) Sharon E. Hook et al.   AQUATIC TOXICOLOGY

Transcriptome of white shrimp Litopenaeus vannamei induced with rapamycin reveals the role of autophagy in shrimp immunity

(2018) Wenlin Wu et al.   FISH & SHELLFISH IMMUNOLOGY

Benzo[a]pyrene exposure under future ocean acidification scenarios weakens the immune responses of blood clam, Tegillarca granosa

(2017) Wenhao Su et al.   FISH & SHELLFISH IMMUNOLOGY

Differential gene responses in the embryo of the green mussel Perna viridis exposed to dichlorodiphenyltrichloroethane (DDT)

(2017) Xiu Jiang et al.   Toxicology Research

Identification and expression of proteolysis-response genes forMacrophthalmus japonicusexposure to irgarol toxicity

(2016) Kiyun Park et al.   ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY

Transcriptomic responses of Perna viridis embryo to Benzo(a)pyrene exposure elucidated by RNA sequencing

(2016) Xiu Jiang et al.   CHEMOSPHERE

Short-term exposure to benzo[a]pyrene causes oxidative damage and affects haemolymph steroid levels in female crab Portunus trituberculatus

(2016) Jianmin Wen et al.   ENVIRONMENTAL POLLUTION

Responses of juvenile southern flounder exposed to Deepwater Horizon oil-contaminated sediments

(2016) Nancy J. Brown-Peterson et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Global transcriptomic profiling in barramundi (Lates calcarifer) from rivers impacted by differing agricultural land uses

(2016) Sharon E. Hook et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Biological effects of marine diesel oil exposure in red king crab (Paralithodes camtschaticus) assessed through a water and foodborne exposure experiment

(2016) Kjetil Sagerup et al.   MARINE ENVIRONMENTAL RESEARCH

Transcriptomic evaluation of the American oyster, Crassostrea virginica , deployed during the Deepwater Horizon oil spill: Evidence of an active hydrocarbon response pathway

(2016) Matthew J. Jenny et al.   MARINE ENVIRONMENTAL RESEARCH

Environmental effects of the Deepwater Horizon oil spill: A review

(2016) Jonny Beyer et al.   MARINE POLLUTION BULLETIN

Transcriptome assembly and expression profiling of molecular responses to cadmium toxicity in hepatopancreas of the freshwater crab Sinopotamon henanense

(2016) Min Sun et al.   Scientific Reports

De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus) following exposure to surrogate Macondo crude oil

(2015) Bree K. Yednock et al.   BMC GENOMICS

Toxic effects upon exposure to benzo[a]pyrene in juvenile white shrimp Litopenaeus vannamei

(2015) Xianyun Ren et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Unexpected Interaction with Dispersed Crude Oil Droplets Drives Severe Toxicity in Atlantic Haddock Embryos

(2015) Elin Sørhus et al.   PLoS One

De Novo Assembly and Characterization of the Invasive Northern Pacific Seastar Transcriptome

(2015) Mark F. Richardson et al.   PLoS One

Using a multibiomarker approach and behavioural responses to assess the effects of anthracene in Palaemon serratus

(2014) Carlos Gravato et al.   AQUATIC TOXICOLOGY

Metabolic enzyme activities, metabolism-related genes expression and bioaccumulation in juvenile white shrimp Litopenaeus vannamei exposed to benzo[a]pyrene

(2014) Xianyun Ren et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata

(2014) Nathan Kenny et al.   Marine Drugs

Changes in the concentration and relative abundance of alkanes and PAHs from the Deepwater Horizon oiling of coastal marshes

(2014) R.E. Turner et al.   MARINE POLLUTION BULLETIN

Insights into Hepatopancreatic Functions for Nutrition Metabolism and Ovarian Development in the Crab Portunus trituberculatus: Gene Discovery in the Comparative Transcriptome of Different Hepatopancreas Stages

(2014) Wei Wang et al.   PLoS One

De Novo Assembly of a Transcriptome for Calanus finmarchicus (Crustacea, Copepoda) – The Dominant Zooplankter of the North Atlantic Ocean

(2014) Petra H. Lenz et al.   PLoS One

Genomic and Genotoxic Responses to Controlled Weathered-Oil Exposures Confirm and Extend Field Studies on Impacts of the Deepwater Horizon Oil Spill on Native Killifish

(2014) Whitney Pilcher et al.   PLoS One

Immunotoxic effect of Benzo[α]Pyrene and chrysene in juvenile white shrimp Litopenaeus vannamei

(2014) Xianyun Ren et al.   Open Life Sciences

Effect of crude oil petroleum hydrocarbons on protein expression of the prawn Macrobrachium borellii

(2013) M.Y. Pasquevich et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Oil Pollution in the Marine Environment I: Inputs, Big Spills, Small Spills, and Dribbles

(2013) John W. Farrington   ENVIRONMENT

Multitissue Molecular, Genomic, and Developmental Effects of the Deepwater Horizon Oil Spill on Resident Gulf Killifish (Fundulus grandis)

(2013) Benjamin Dubansky et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metal accumulation in the greentail prawn, Metapenaeus bennettae, in Sydney and Port Hacking estuaries, Australia

(2013) K. L. M. Lewtas et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Molecular cloning and expression analysis of chymotrypsin-like serine protease from the redclaw crayfish (Cherax quadricarinatus): A possible role in the junior and adult innate immune systems

(2013) Di-An Fang et al.   FISH & SHELLFISH IMMUNOLOGY

Identification of differentially expressed genes in hepatopancreas of oriental river prawn, Macrobrachium nipponense exposed to environmental hypoxia

(2013) Shengming Sun et al.   GENE

Small-scale variation in reproduction and abundance of greentail prawn, Metapenaeus bennettae Racek and Dall, 1965

(2013) Caitlin L. Young et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Behaviour and biomarkers as tools to assess the acute toxicity of benzo(a)pyrene in the common prawn Palaemon serratus

(2013) Carlos Silva et al.   MARINE ENVIRONMENTAL RESEARCH

Interactions between Zooplankton and Crude Oil: Toxic Effects and Bioaccumulation of Polycyclic Aromatic Hydrocarbons

(2013) Rodrigo Almeda et al.   PLoS One

Effects of Crude Oil Exposure on Bioaccumulation of Polycyclic Aromatic Hydrocarbons and Survival of Adult and Larval Stages of Gelatinous Zooplankton

(2013) Rodrigo Almeda et al.   PLoS One

Short-term toxic effects of naphthalene and pyrene on the common prawn (Palaemon serratus) assessed by a multi-parameter laboratorial approach: mechanisms of toxicity and impairment of individual fitness

(2012) Luís G. Luís et al.   BIOMARKERS

Pattern recognition receptors acting in innate immune system of shrimp against pathogen infections

(2012) Xian-Wei Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

(2012) Ana Riesgo et al.   Frontiers in Zoology

Applications for next-generation sequencing in fish ecotoxicogenomics

(2012) Alvine C. Mehinto et al.   Frontiers in Genetics

Revealing the properties of oils from their dissolved hydrocarbon compounds in water with an integrated sensor array system

(2011) Xiubin Qi et al.   ANALYST

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

(2011) Victor Zeng et al.   BMC GENOMICS

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

Antioxidant response and oxidative stress levels in Macrobrachium borellii (Crustacea: Palaemonidae) exposed to the water-soluble fraction of petroleum

(2011) S. Lavarías et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes

(2011) A. Whitehead et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biomarkers of PAHs exposure in crabs Ucides cordatus: Laboratory assay and field study

(2010) Adriana H. Nudi et al.   ENVIRONMENTAL RESEARCH

Hepatic gene expression in rainbow trout (Oncorhynchus mykiss) exposed to different hydrocarbon mixtures

(2010) Sharon E. Hook et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

A guide to toxicity assessment and monitoring effects at lower levels of biological organization following marine oil spills in European waters

(2010) C. Martinez-Gomez et al.   ICES JOURNAL OF MARINE SCIENCE

Chronic toxicity of contaminated sediments on reproduction and histopathology of the crustacean Gammarus fossarum and relationship with the chemical contamination and in vitro effects

(2010) Edita Mazurová et al.   JOURNAL OF SOILS AND SEDIMENTS

Cloning and characterization of a β-1,3-glucan-binding protein from shrimp Fenneropenaeus chinensis

(2010) Xiaofang Lai et al.   MOLECULAR BIOLOGY REPORTS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Acyl-CoA Dehydrogenases: Dynamic History of Protein Family Evolution

(2009) Zuzana Swigoňová et al.   JOURNAL OF MOLECULAR EVOLUTION

Improved flatfish health following remediation of a PAH-contaminated site in Eagle Harbor, Washington

(2008) Mark S. Myers et al.   AQUATIC TOXICOLOGY

Cytochrome P450 expression is moult stage specific and regulated by ecdysteroids and xenobiotics in the crab Carcinus maenas

(2008) Esben Dam et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DNA damage and cell necrosis induced by naphthalene due to the modulation of biotransformation enzymes in an estuarine crabScylla serrata

(2008) K. Vijayavel et al.   JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY

Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil

(2008) Kei Nakayama et al.   MARINE POLLUTION BULLETIN