Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules
出版年份 2016 全文链接
标题
Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules
作者
关键词
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出版物
JOURNAL OF CHEMICAL PHYSICS
Volume 145, Issue 10, Pages 100901
出版商
AIP Publishing
发表日期
2016-09-09
DOI
10.1063/1.4962258
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- Toward an Accurate Modeling of Hydrodynamic Effects on the Translational and Rotational Dynamics of Biomolecules in Many-Body Systems
- (2015) Maciej Długosz et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2015) Edmond Chow et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Particle Simulation of Oxidation Induced Band 3 Clustering in Human Erythrocytes
- (2015) Hanae Shimo et al. PLoS Computational Biology
- Whole Cell Modeling: From Single Cells to Colonies
- (2014) John A. Cole et al. ISRAEL JOURNAL OF CHEMISTRY
- Computationally efficient algorithms for incorporation of hydrodynamic and excluded volume interactions in Brownian dynamics simulations: A comparative study of the Krylov subspace and Chebyshev based techniques
- (2014) Amir Saadat et al. JOURNAL OF CHEMICAL PHYSICS
- Synthetic biology: How best to build a cell
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- (2014) D. Ewen Cameron et al. NATURE REVIEWS MICROBIOLOGY
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- (2014) Joseph R. Peterson et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Sliding of Proteins Non-specifically Bound to DNA: Brownian Dynamics Studies with Coarse-Grained Protein and DNA Models
- (2014) Tadashi Ando et al. PLoS Computational Biology
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- (2013) Ron Milo BIOESSAYS
- On the Importance of Hydrodynamic Interactions in Lipid Membrane Formation
- (2013) Tadashi Ando et al. BIOPHYSICAL JOURNAL
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- (2013) Weiwei Yin et al. BMC Systems Biology
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- (2013) Tadashi Ando et al. JOURNAL OF CHEMICAL PHYSICS
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- (2012) Eefei Chen et al. BIOCHEMISTRY
- Estimation of dynamic flux profiles from metabolic time series data
- (2012) I-Chun Chou et al. BMC Systems Biology
- Krylov subspace methods for computing hydrodynamic interactions in Brownian dynamics simulations
- (2012) Tadashi Ando et al. JOURNAL OF CHEMICAL PHYSICS
- Atomic Detail Brownian Dynamics Simulations of Concentrated Protein Solutions with a Mean Field Treatment of Hydrodynamic Interactions
- (2012) Paolo Mereghetti et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Are Hydrodynamic Interactions Important in the Kinetics of Hydrophobic Collapse?
- (2012) Jingyuan Li et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Dynamics in dense hard-sphere colloidal suspensions
- (2012) Davide Orsi et al. PHYSICAL REVIEW E
- Interplay between Hydrodynamics and the Free Energy Surface in the Assembly of Nanoscale Hydrophobes
- (2011) Joseph A. Morrone et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Protein self-diffusion in crowded solutions
- (2011) F. Roosen-Runge et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) Qian Wang et al. PLoS Computational Biology
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- (2010) Mohit Kumar et al. BIOPHYSICAL JOURNAL
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- (2010) Paolo Mereghetti et al. BIOPHYSICAL JOURNAL
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- (2010) A. Nenninger et al. JOURNAL OF BACTERIOLOGY
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- (2010) Piotr Szymczak et al. JOURNAL OF PHYSICS-CONDENSED MATTER
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- (2010) Amit Kumar et al. PHYSICAL REVIEW E
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- (2010) M. Gao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences
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- Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm
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