4.6 Article

Development and Validation of a Novel Diagnostic Model for Childhood Autism Spectrum Disorder Based on Ferroptosis-Related Genes

期刊

FRONTIERS IN PSYCHIATRY
卷 13, 期 -, 页码 -

出版社

FRONTIERS MEDIA SA
DOI: 10.3389/fpsyt.2022.886055

关键词

autism spectrum disorder; diagnosis; ferroptosis; random forest; piperaquine

资金

  1. Science and Technology Development Fund Project of Nanjing Medical University [NMUB2019224]

向作者/读者索取更多资源

This study constructed a diagnostic model for childhood ASD based on ferroptosis-related genes and identified potential therapeutic drug. It provides insights for the precise diagnosis and timely treatment of childhood ASD.
Autism spectrum disorder (ASD) is a highly genetic heterogeneous neurodevelopmental disorder, which is usually considered a heritable and heterogeneous neurodevelopmental disorder and has caused a great burden to society and families. Emerging roles of ferroptosis have been observed in neurological disorders. This study aimed to construct a diagnostic model based on ferroptosis-related genes (FRGs) to contribute to the early and precise diagnosis of childhood ASD. In the candidate FRGs, we identified 27 differentially expressed genes (DEGs) between ASD patients and typically developing (TD) controls. Four key FRGs were identified using the random forest analysis for further analysis. Utilization of the four gene expression, we constructed a diagnostic model and the AUC value in the training dataset (GSE18123) is 0.7002. We deem that a patient with a score less than 0.9904 is likely to have ASD. Three validation datasets (GSE111176, GSE113834, and GSE28521) were collected and the AUC value is 0.7442, 0.7444, and 0.6474, respectively. A multi-factor regulatory network based on four FRGs indicated that RORA, EAF1, NFYB, miR-4703-3p, and miR-6073 may play a role in the development of ASD. In addition, we found piperaquine may have the potential to be a promising drug for the treatment of ASD. Overall, we constructed a diagnostic model of childhood ASD, which could contribute to the precision diagnosis and timely treatment of childhood ASD.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Oncology

High LINC00536 expression promotes tumor progression and poor prognosis in bladder cancer

Ran Li, Lei Zhang, Zhiqiang Qin, Yunfei Wei, Zhonglei Deng, Chen Zhu, Jingyuan Tang, Long Ma

EXPERIMENTAL CELL RESEARCH (2019)

Article Cell Biology

Di-n-butyl phthalate epigenetically induces reproductive toxicity via the PTEN/AKT pathway

Ran Li, Qian-wei Xing, Xiao-lu Wu, Lei Zhang, Min Tang, Jing-yuan Tang, Jing-zi Wang, Peng Han, Shang-qian Wang, Wei Wang, Wei Zhang, Guo-ping Zhou, Zhi-qiang Qin

CELL DEATH & DISEASE (2019)

Article Oncology

Genetic variants in a long noncoding RNA related to Sunitinib Resistance predict risk and survival of patients with renal cell carcinoma

Qianwei Xing, Ran Li, Aiming Xu, Zhiqiang Qin, Jinyuan Tang, Lei Zhang, Min Tang, Peng Han, Wei Wang, Chao Qin, Mulong Du, Wei Zhang

CANCER MEDICINE (2019)

Review Oncology

Prognostic role of cyclin D2/D3 in multiple human malignant neoplasms: A systematic review and meta-analysis

Zuo-you Ding, Ran Li, Qi-jie Zhang, Yi Wang, Yi Jiang, Qing-yang Meng, Qiu-lei Xi, Guo-hao Wu

CANCER MEDICINE (2019)

Article Environmental Sciences

The role of ANXA5 in DBP-induced oxidative stress through ERK/Nrf2 pathway

Lei Zhang, Zhiqiang Qin, Ran Li, Shangqian Wang, Wei Wang, Min Tang, Wei Zhang

ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY (2019)

Review Andrology

Experience of diagnosis and management of metanephric adenoma: retrospectively analysis of 10 cases and a literature review

Lei Zhang, Xian Gao, Ran Li, Kedong Li, Bianjiang Liu, Jie Li, Wei Zhang, Min Tang

TRANSLATIONAL ANDROLOGY AND UROLOGY (2020)

Article Immunology

Development and Validation of a Novel Prognostic Model for Acute Myeloid Leukemia Based on Immune-Related Genes

Ran Li, Zuoyou Ding, Peng Jin, Shishuang Wu, Ge Jiang, Rufang Xiang, Wenfang Wang, Zhen Jin, Xiaoyang Li, Kai Xue, Xiaolu Wu, Junmin Li

Summary: The prognosis of acute myeloid leukemia is closely related to changes in immune response. The immune-17 signature established in this study may be a useful model for evaluating AML survival outcomes and improving treatment selection.

FRONTIERS IN IMMUNOLOGY (2021)

Article Cell Biology

Chidamide triggers BTG1-mediated autophagy and reverses the chemotherapy resistance in the relapsed/refractory B-cell lymphoma

Kai Xue, Ji-Chuan Wu, Xi-Ya Li, Ran Li, Qun-ling Zhang, Jin-Jia Chang, Yi-Zhen Liu, Chun-Hui Xu, Jia-Ying Zhang, Xiao-Jian Sun, Juan J. Gu, Wei-Jian Guo, Lan Wang

Summary: The study demonstrated that chidamide showed therapeutic effects in rituximab/chemotherapy resistant B-cell lymphoma by inhibiting cell growth, inducing cell death, and activating autophagy pathway. Chidamide targeted BTG1 and FOXO1 genes, regulating autophagy and cell cycle, and enhanced the efficacy when combined with cisplatin in a synergistic manner. These findings provide a theoretical and mechanistic basis for further evaluation of chidamide-based treatment in relapsed and refractory B-cell lymphoma patients.

CELL DEATH & DISEASE (2021)

Article Multidisciplinary Sciences

Identification of key genes and pathways between mild-moderate and severe asthmatics via bioinformatics analysis

Xiaolu Wu, Ran Li, Qu Xu, Feng Liu, Yue Jiang, Min Zhang, Meiling Tong

Summary: This study aimed to identify potential biomarkers for severe asthma. Through the analysis of gene expression data, researchers identified a set of genes that were associated with metabolism and immune-related processes. Some of these genes were validated to have higher expression levels in severe asthma patients. Network analysis further revealed transcription factors that may be involved in the development of asthma. Additionally, certain drugs were found to interact with these genes and were negatively associated with gene expression.

SCIENTIFIC REPORTS (2022)

Article Oncology

Immune-relatedlncRNAs can predict the prognosis of acute myeloid leukemia

Ran Li, Shishuang Wu, Xiaolu Wu, Ping Zhao, Jingyi Li, Kai Xue, Junmin Li

Summary: The study established a prognostic model based on IRL signature for predicting AML patients' overall survival, demonstrating its reliability and effectiveness. The prognostic model, in conjunction with clinical features via a nomogram, improved prognostic accuracy and identified the potential roles of monocytes and metabolism pathways in AML progression.

CANCER MEDICINE (2022)

Article Cell Biology

Identification of an Immune-Related LncRNA Signature in Gastric Cancer to Predict Survival and Response to Immune Checkpoint Inhibitors

Zuoyou Ding, Ran Li, Jun Han, Diya Sun, Lei Shen, Guohao Wu

Summary: This study constructed a prognostic model based on immune-related lncRNAs (IRLs) for predicting overall survival and response to immune checkpoint inhibitors (ICIs) in gastric cancer patients. The IRL signature could distinguish different risk patients and a nomogram efficiently predicted overall survival. Tumor microenvironment and mutation status partially explained the predictive capability of the IRL signature.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)

Article Biochemistry & Molecular Biology

A pan-cancer analysis identifies HDAC11 as an immunological and prognostic biomarker

Ran Li, Xiaolu Wu, Ping Zhao, Kai Xue, Junmin Li

Summary: The study finds that HDAC11 is aberrantly expressed in multiple types of cancer and is associated with prognosis and tumor immunity. HDAC11 is also correlated with tumor mutational burden, microsatellite instability, and drug sensitivity. These findings provide clues for further understanding of the key role of HDAC11 in multiple cancers.

FASEB JOURNAL (2022)

Article Oncology

ITGAL infers adverse prognosis and correlates with immunity in acute myeloid leukemia

Ran Li, Xiaolu Wu, Kai Xue, Junmin Li

Summary: ITGAL is highly expressed in acute myeloid leukemia and is associated with poor prognosis. It is correlated with age and cytogenetic risk classifications, but not with AML driver gene mutations. Functional analysis reveals that ITGAL is involved in the production and metabolic process of cytokines. Additionally, ITGAL is closely related to the number of MDSCs and cytokine production.

CANCER CELL INTERNATIONAL (2022)

Article Oncology

FGF13 suppresses acute myeloid leukemia by regulating bone marrow niches

Ran Li, Kai Xue, Junmin Li

Summary: FGF13 is lowly expressed in AML patients and its elevated expression is associated with prolonged survival. It is closely related to the bone marrow microenvironment, T cell count, immune checkpoint genes, and cytokines. Overexpression of FGF13 inhibits AML cell growth and prolongs the survival of recipient mice.

FRONTIERS OF MEDICINE (2022)

暂无数据