Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome
出版年份 2022 全文链接
标题
Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome
作者
关键词
Heredity, Gastrointestinal tract, Genome-wide association studies, Human genetics, Renal system, Sepsis, Bacterial genetics, Bacterial genomics
出版物
PLoS Genetics
Volume 18, Issue 3, Pages e1010112
出版商
Public Library of Science (PLoS)
发表日期
2022-03-25
DOI
10.1371/journal.pgen.1010112
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome evolution and the emergence of pathogenicity in avian Escherichia coli
- (2021) Leonardos Mageiros et al. Nature Communications
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
- (2021) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period
- (2021) Guilhem Royer et al. Genome Medicine
- Increasing incidence and antimicrobial resistance in Escherichia coli bloodstream infections: a multinational population-based cohort study
- (2021) Melissa C. MacKinnon et al. Antimicrobial Resistance and Infection Control
- Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity
- (2020) Amber C. A. Hendriks et al. BMC GENOMICS
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- SciPy 1.0: fundamental algorithms for scientific computing in Python
- (2020) Pauli Virtanen et al. NATURE METHODS
- Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it
- (2020) V de Lastours et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation
- (2020) Chrispin Chaguza et al. Nature Communications
- Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
- (2020) Marie Touchon et al. PLoS Genetics
- Array programming with NumPy
- (2020) Charles R. Harris et al. NATURE
- The population genetics of pathogenic Escherichia coli
- (2020) Erick Denamur et al. NATURE REVIEWS MICROBIOLOGY
- Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae
- (2020) Kevin C. Ma et al. Nature Communications
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
- (2020) Michael Biggel et al. Nature Communications
- Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
- (2019) John A. Lees et al. Nature Communications
- pyseer: a comprehensive tool for microbial pangenome-wide association studies
- (2018) John A Lees et al. BIOINFORMATICS
- Bioconda: sustainable and comprehensive software distribution for the life sciences
- (2018) Björn Grüning et al. NATURE METHODS
- Impact of host-pathogen-treatment tripartite components on early mortality of patients with Escherichia coli bloodstream infection: Prospective observational study
- (2018) Eun-Jeong Yoon et al. EBioMedicine
- The UK Biobank resource with deep phenotyping and genomic data
- (2018) Clare Bycroft et al. NATURE
- A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events
- (2018) Magali Jaillard et al. PLoS Genetics
- Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
- (2017) Antonina A. Votintseva et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and Accurate Construction of Confidence Intervals for Heritability
- (2016) Regev Schweiger et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3)
- (2016) Mervyn Singer et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Bacterial genomics: Microbial GWAS coming of age
- (2016) Daniel Falush Nature Microbiology
- Identifying lineage effects when controlling for population structure improves power in bacterial association studies
- (2016) Sarah G. Earle et al. Nature Microbiology
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Thirty day all-cause mortality in patients with Escherichia coli bacteraemia in England
- (2015) J.K. Abernethy et al. CLINICAL MICROBIOLOGY AND INFECTION
- SIFT missense predictions for genomes
- (2015) Robert Vaser et al. Nature Protocols
- Impact of virulence genes on sepsis severity and survival inEscherichia colibacteremia
- (2015) Marta Mora-Rillo et al. Virulence
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Rapid bacterial genome sequencing: methods and applications in clinical microbiology
- (2013) C. Bertelli et al. CLINICAL MICROBIOLOGY AND INFECTION
- Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions
- (2013) W. Florian Fricke et al. NATURE REVIEWS GENETICS
- Biosynthesis of Osmoregulated Periplasmic Glucans inEscherichia coli: The Phosphoethanolamine Transferase Is Encoded byopgE
- (2013) Sébastien Bontemps-Gallo et al. Biomed Research International
- Concentration of osmoregulated periplasmic glucans (OPGs) modulates the activation level of the RcsCD RcsB phosphorelay in the phytopathogen bacteriaDickeya dadantii
- (2012) Sébastien Bontemps-Gallo et al. ENVIRONMENTAL MICROBIOLOGY
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Transforming clinical microbiology with bacterial genome sequencing
- (2012) Xavier Didelot et al. NATURE REVIEWS GENETICS
- Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
- (2011) Ryan K. Dale et al. BIOINFORMATICS
- Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model
- (2011) L. Landraud et al. CLINICAL MICROBIOLOGY AND INFECTION
- FaST linear mixed models for genome-wide association studies
- (2011) Christoph Lippert et al. NATURE METHODS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Host Factors and Portal of Entry Outweigh Bacterial Determinants To Predict the Severity of Escherichia coli Bacteremia
- (2010) A. Lefort et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium are required for optimal virulence in mice
- (2009) A. A. Bhagwat et al. MICROBIOLOGY-SGM
- Heritability in the genomics era — concepts and misconceptions
- (2008) Peter M. Visscher et al. NATURE REVIEWS GENETICS
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