An organ‐specific transcriptomic atlas of the medicinal plant Bletilla striata : Protein‐coding genes, microRNAs, and regulatory networks

Organ-specific, integrated omics data-based study on the metabolic pathways of the medicinal plant Bletilla striata (Orchidaceae)

(2021) Xiaoxia Ma et al.   BMC PLANT BIOLOGY

Orchids and their mycorrhizal fungi: an insufficiently explored relationship

(2020) Quentin Favre-Godal et al.   MYCORRHIZA

The miR396-GRFs Module Mediates the Prevention of Photo-oxidative Damage by Brassinosteroids during Seedling De-Etiolation in Arabidopsis

(2020) Lingyan Wang et al.   PLANT CELL

Full Transcriptome Analysis of Callus Suspension Culture System of Bletilla striata

(2020) Lin Li et al.   Frontiers in Genetics

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape

(2019) Mingzhe Sun et al.   PLANT SCIENCE

Bioinformatics-assisted, integrated omics studies on medicinal plants

(2019) Xiaoxia Ma et al.   BRIEFINGS IN BIOINFORMATICS

Chemical Constituents, Pharmacologic Properties, and Clinical Applications of Bletilla striata

(2019) Delin Xu et al.   Frontiers in Pharmacology

OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism

(2019) Yu-Chan Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4

(2018) Li Qu et al.   Journal of Integrative Plant Biology

miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants

(2018) Zheng Kuang et al.   BIOINFORMATICS

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Bletilla striata: Medicinal uses, phytochemistry and pharmacological activities

(2017) Xirui He et al.   JOURNAL OF ETHNOPHARMACOLOGY

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Contemporary Understanding of miRNA-Based Regulation of Secondary Metabolites Biosynthesis in Plants

(2017) Om P. Gupta et al.   Frontiers in Plant Science

Arabidopsis miR171-Targeted Scarecrow-Like Proteins Bind to GT cis-Elements and Mediate Gibberellin-Regulated Chlorophyll Biosynthesis under Light Conditions

(2014) Zhaoxue Ma et al.   PLoS Genetics

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress

(2013) Zhiyong Ni et al.   PLANT MOLECULAR BIOLOGY

A reversed framework for the identification of microRNA-target pairs in plants

(2012) C. Shao et al.   BRIEFINGS IN BIOINFORMATICS

Regulation of Leaf Morphology by MicroRNA394 and its Target LEAF CURLING RESPONSIVENESS

(2012) J. B. Song et al.   PLANT AND CELL PHYSIOLOGY

Toward microRNA-mediated gene regulatory networks in plants

(2011) Y. Meng et al.   BRIEFINGS IN BIOINFORMATICS

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

miR393 and Secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves

(2011) A. Si-Ammour et al.   PLANT PHYSIOLOGY

Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis

(2011) Surya Kant et al.   PLoS Genetics

Therapeutic orchids: traditional uses and recent advances — An overview

(2010) Mohammad Musharof Hossain   FITOTERAPIA

miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis

(2010) Li Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

miR171 Family Members are Involved in Drought Response in Solanum tuberosum

(2010) Eul-Won Hwang et al.   JOURNAL OF PLANT BIOLOGY

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

Complex Regulation of Two Target Genes Encoding SPX-MFS Proteins by Rice miR827 in Response to Phosphate Starvation

(2010) S.-I. Lin et al.   PLANT AND CELL PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

(2009) R. E. Rodriguez et al.   DEVELOPMENT

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS