The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season

Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome

(2022) Kyle M. Meyer et al.   ISME Journal

Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development

(2021) Kathleen Beilsmith et al.   mBio

A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme

(2021) Katharina Eitzen et al.   eLife

Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype

(2021) Nejc Stopnisek et al.   ISME Journal

Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing

(2021) Teresa Mayer et al.   Molecular Ecology Resources

Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen

(2021) Christine M. Vogel et al.   Nature Microbiology

Community succession of the grapevine fungal microbiome in the annual growth cycle

(2020) Di Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Shaping the leaf microbiota: plant–microbe–microbe interactions

(2020) Vasvi Chaudhry et al.   JOURNAL OF EXPERIMENTAL BOTANY

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Ecological Functions of Agricultural Soil Bacteria and Microeukaryotes in Chitin Degradation: A Case Study

(2019) Adam S. Wieczorek et al.   Frontiers in Microbiology

Contrasting Winter Versus Summer Microbial Communities and Metabolic Functions in a Permafrost Thaw Lake

(2019) Adrien Vigneron et al.   Frontiers in Microbiology

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Reintroducing mothur: 10 years later

(2019) Patrick D. Schloss   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Timescales of gut microbiome dynamics

(2019) Brandon H Schlomann et al.   CURRENT OPINION IN MICROBIOLOGY

Integrating the underlying structure of stochasticity into community ecology

(2019) Lauren G. Shoemaker et al.   ECOLOGY

Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species

(2019) Julien Massoni et al.   ISME Journal

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

(2019) Keara L. Grady et al.   Nature Communications

Gut microbiota structure differs between honeybees in winter and summer

(2019) Lucie Kešnerová et al.   ISME Journal

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales

(2018) Talia L. Karasov et al.   Cell Host & Microbe

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

(2018) Claudia Bartoli et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

A long-term survey unveils strong seasonal patterns in the airborne microbiome coupled to general and regional atmospheric circulations

(2018) Joan Cáliz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

(2017) Tiantian Ren et al.   Microbiome

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

DyNet: visualization and analysis of dynamic molecular interaction networks

(2016) Ivan H. Goenawan et al.   BIOINFORMATICS

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

The isolation and characterization of resident yeasts from the phylloplane of Arabidopsis thaliana

(2016) Kai Wang et al.   Scientific Reports

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Seasonal Community Succession of the Phyllosphere Microbiome

(2015) Julia K. Copeland et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Mathematical modeling of primary succession of murine intestinal microbiota

(2013) S. Marino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Hyaloperonospora arabidopsidisas a Pathogen Model

(2010) Mary E. Coates et al.   Annual Review of Phytopathology