Ancient genome provides insights into the history of Eurasian lynx in Iberia and Western Europe

Mitogenome Phylogeny Including Data from Additional Subspecies Provides New Insights into the Historical Biogeography of the Eurasian lynx Lynx lynx

(2021) Deniz Mengüllüoğlu et al.   Genes

History, demography and genetic status of Balkan and Caucasian Lynx lynx (Linnaeus, 1758) populations revealed by genome‐wide variation

(2021) Enrico Bazzicalupo et al.   DIVERSITY AND DISTRIBUTIONS

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts

(2020) Maria Lucena‐Perez et al.   MOLECULAR ECOLOGY

Latitudinal gradient in dairy production with the introduction of farming in Atlantic Europe

(2020) Miriam Cubas et al.   Nature Communications

A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism

(2020) Reuben M. Buckley et al.   PLoS Genetics

Transhumance and long-term deforestation in the subalpine belt of the central Spanish Pyrenees: An interdisciplinary approach

(2020) José M. García-Ruiz et al.   CATENA

Genetic turnovers and northern survival during the last glacial maximum in European brown bears

(2019) Erik Ersmark et al.   Ecology and Evolution

Post-glacial colonization of Western Europe brown bears from a cryptic Atlantic refugium out of the Iberian Peninsula

(2017) Ana García-Vázquez et al.   HISTORICAL BIOLOGY

Mitochondrial DNA of pre-last glacial maximum red deer from NW Spain suggests a more complex phylogeographical history for the species

(2017) Alba Rey-Iglesia et al.   Ecology and Evolution

Latest Early Pleistocene remains of Lynx pardinus (Carnivora, Felidae) from the Iberian Peninsula: Taxonomy and evolutionary implications

(2016) Alberto Boscaini et al.   QUATERNARY SCIENCE REVIEWS

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

(2015) Gang Li et al.   GENOME RESEARCH

Ancient DNA reveals past existence of Eurasian lynx in Spain

(2015) R. Rodríguez-Varela et al.   JOURNAL OF ZOOLOGY

Ancient DNA evidence of Iberian lynx palaeoendemism

(2015) Ricardo Rodríguez-Varela et al.   QUATERNARY SCIENCE REVIEWS

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Ancient mitochondrial DNA and the genetic history of Eurasian beaver (Castor fiber) in Europe

(2014) Susanne Horn et al.   MOLECULAR ECOLOGY

Large-Scale Genetic Structuring of a Widely Distributed Carnivore - The Eurasian Lynx (Lynx lynx)

(2014) Eli K. Rueness et al.   PLoS One

Timing of deglaciation and postglacial environmental dynamics in NW Iberia: the Sanabria Lake record

(2014) Margarita Jambrina-Enríquez et al.   QUATERNARY SCIENCE REVIEWS

Using historical accounts to set conservation baselines: the case of Lynx species in Spain

(2013) Miguel Clavero et al.   BIODIVERSITY AND CONSERVATION

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data

(2013) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences

(2013) Matteo Fumagalli   PLoS One

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human response to Holocene warming on the Cantabrian Coast (northern Spain): an unexpected outcome

(2013) Ana B. Marín-Arroyo   QUATERNARY SCIENCE REVIEWS

IntCal13 and Marine13 Radiocarbon Age Calibration Curves 0–50,000 Years cal BP

(2013) Paula J Reimer et al.   RADIOCARBON

Repetitive sequences in Eurasian lynx (Lynx lynx L.) mitochondrial DNA control region

(2012) Magda Sindičić et al.   Mitochondrial DNA

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Long-term deforestation in NW Spain: linking the Holocene fire history to vegetation change and human activities

(2010) Joeri Kaal et al.   QUATERNARY SCIENCE REVIEWS

Expected trends and surprises in the Lateglacial and Holocene vegetation history of the Iberian Peninsula and Balearic Islands

(2010) José S. Carrión et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Historical and recent changes in the Spanish forests: A socio-economic process

(2009) María Valbuena-Carabaña et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos)

(2008) Cristina E. Valdiosera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA