Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium

(2021) Yuka Yashiro et al.   Cell Reports

Polymorphic Toxins and Their Immunity Proteins: Diversity, Evolution, and Mechanisms of Delivery

(2020) Zachary C. Ruhe et al.   Annual Review of Microbiology

Complete chemical structures of human mitochondrial tRNAs

(2020) Takeo Suzuki et al.   Nature Communications

Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex

(2019) Yuka Yashiro et al.   STRUCTURE

Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins

(2019) Grant C. Gucinski et al.   STRUCTURE

Ribotoxins Kill Cells by Chopping off the Head of tRNAs

(2019) Raven H. Huang   STRUCTURE

Programmed Secretion Arrest and Receptor-Triggered Toxin Export during Antibacterial Contact-Dependent Growth Inhibition

(2018) Zachary C. Ruhe et al.   CELL

Determination of tRNA aminoacylation levels by high-throughput sequencing

(2017) Molly E. Evans et al.   NUCLEIC ACIDS RESEARCH

Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs

(2017) Karolina Michalska et al.   NUCLEIC ACIDS RESEARCH

Activation of contact-dependent antibacterial tRNase toxins by translation elongation factors

(2017) Allison M. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of an anti-bacterial toxin by the biosynthetic enzyme CysK: mechanism of binding, interaction specificity and competition with cysteine synthase

(2017) Roberto Benoni et al.   Scientific Reports

Dual Role of a Biosynthetic Enzyme, CysK, in Contact Dependent Growth Inhibition in Bacteria

(2016) Soni Kaundal et al.   PLoS One

Unraveling the essential role of CysK in CDI toxin activation

(2016) Parker M. Johnson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contact-Dependent Growth Inhibition (CDI) and CdiB/CdiA Two-Partner Secretion Proteins

(2015) Julia L.E. Willett et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu

(2015) Søren S. Thirup et al.   JOURNAL OF STRUCTURAL BIOLOGY

Measurement of Acceptor-TΨC Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme

(2015) Seisuke Yamashita et al.   STRUCTURE

Structures and Functions of Qβ Replicase: Translation Factors beyond Protein Synthesis

(2014) Kozo Tomita   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Direct Evidence of an Elongation Factor-Tu/Ts·GTP·Aminoacyl-tRNA Quaternary Complex

(2014) Benjamin J. Burnett et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1

(2014) Daijiro Takeshita et al.   NUCLEIC ACIDS RESEARCH

Mechanisms and Biological Roles of Contact-Dependent Growth Inhibition Systems

(2014) C. S. Hayes et al.   Cold Spring Harbor Perspectives in Medicine

Molecular mechanisms of template-independent RNA polymerization by tRNA nucleotidyltransferases

(2014) Kozo Tomita et al.   Frontiers in Genetics

Elongation Factor Ts Directly Facilitates the Formation and Disassembly of theEscherichia coliElongation Factor Tu·GTP·Aminoacyl-tRNA Ternary Complex

(2013) Benjamin J. Burnett et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial contact-dependent growth inhibition

(2013) Zachary C. Ruhe et al.   TRENDS IN MICROBIOLOGY

Receptor Polymorphism Restricts Contact-Dependent Growth Inhibition to Members of the Same Species

(2013) Z. C. Ruhe et al.   mBio

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Identification of a target cell permissive factor required for contact-dependent growth inhibition (CDI)

(2012) E. J. Diner et al.   GENES & DEVELOPMENT

Molecular basis for RNA polymerization by Qβ replicase

(2012) Daijiro Takeshita et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems

(2012) R. P. Morse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histidine 66 inEscherichia coliElongation Factor Tu Selectively Stabilizes Aminoacyl-tRNAs

(2011) Stephen J. Chapman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria

(2010) Stephanie K. Aoki et al.   NATURE

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

Assembly of Q  viral RNA polymerase with host translational elongation factors EF-Tu and -Ts

(2010) D. Takeshita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GTPase activation of elongation factor EF-Tu by the ribosome during decoding

(2009) Jan-Christian Schuette et al.   EMBO JOURNAL

Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu

(2009) Xabier Agirrezabala et al.   QUARTERLY REVIEWS OF BIOPHYSICS

The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

(2009) T. M. Schmeing et al.   SCIENCE

Preparation and evaluation of acylated tRNAs

(2008) Sarah E. Walker et al.   METHODS