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Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid

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Plasmid-mediated carbapenem and colistin resistance in a clinical isolate of Escherichia coli

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Dissemination of the mcr-1 colistin resistance gene

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Colistin resistance gene mcr-1 and pHNSHP45 plasmid in human isolates of Escherichia coli and Klebsiella pneumoniae

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Investigation of a plasmid genome database for colistin-resistance gene mcr-1

(2016) Satowa Suzuki et al.   LANCET INFECTIOUS DISEASES

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Colistin-resistant Escherichia coli harbouring mcr-1 isolated from food animals in Hanoi, Vietnam

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Dissemination of the mcr-1 colistin resistance gene

(2016) Herman Tse et al.   LANCET INFECTIOUS DISEASES

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

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Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

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Detection ofmcr-1encoding plasmid-mediated colistin-resistantEscherichia coliisolates from human bloodstream infection and imported chicken meat, Denmark 2015

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Use of colistin-containing products within the European Union and European Economic Area (EU/EEA): development of resistance in animals and possible impact on human and animal health

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Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

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(2014) Alexandros Stamatakis   BIOINFORMATICS

The Molecular Epidemiological Characteristics and Genetic Diversity of Salmonella Typhimurium in Guangdong, China, 2007–2011

(2014) Jiufeng Sun et al.   PLoS One

Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria

(2014) Abiola O. Olaitan et al.   Frontiers in Microbiology

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

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Therapeutic options for infections withEnterobacteriaceaeproducing carbapenem-hydrolyzing enzymes

(2011) Matthew E Falagas et al.   Future Microbiology

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

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Fast and accurate short read alignment with Burrows-Wheeler transform

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Major Uropathogenic Escherichia coli Strain Isolated in the Northwest of England Identified by Multilocus Sequence Typing

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