Phylogenomic analysis of evolutionary relationships in Ranitomeya poison frogs (Family Dendrobatidae) using ultraconserved elements

Mechanisms for color convergence in a mimetic radiation of poison frogs

(2020) Evan Twomey et al.   AMERICAN NATURALIST

New methods to calculate concordance factors for phylogenomic datasets

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Links between prey assemblages and poison frog toxins: A landscape ecology approach to assess how biotic interactions affect species phenotypes

(2019) Ivan Prates et al.   Ecology and Evolution

Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements

(2019) Wilson X. Guillory et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Phylogenetic Systematics of Dart-Poison Frogs and Their Relatives Revisited (Anura: Dendrobatoidea)

(2017) Taran Grant et al.   South American Journal of Herpetology

Predicting the genetic consequences of future climate change: The power of coupling spatial demography, the coalescent, and historical landscape changes

(2016) J. L. Brown et al.   AMERICAN JOURNAL OF BOTANY

Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences

(2016) Nicholas W. Persons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

(2016) Ivan Prates et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)

(2015) Peter A. Hosner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Automation and Evaluation of the SOWH Test with SOWHAT

(2015) Samuel H. Church et al.   SYSTEMATIC BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Experimental evidence for predator learning and Müllerian mimicry in Peruvian poison frogs (Ranitomeya, Dendrobatidae)

(2013) Adam M. M. Stuckert et al.   EVOLUTIONARY ECOLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Amazonian Amphibian Diversity Is Primarily Derived from Late Miocene Andean Lineages

(2009) Juan C Santos et al.   PLOS BIOLOGY

The role of predator selection on polymorphic aposematic poison frogs

(2008) B. P Noonan et al.   Biology Letters

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

SPOTTED POISON FROGS: REDISCOVERY OF A LOST SPECIES AND A NEW GENUS (ANURA: DENDROBATIDAE) FROM NORTHWESTERN PERU

(2008) Evan Twomey et al.   HERPETOLOGICA

The evolution of Müllerian mimicry

(2008) Thomas N. Sherratt   NATURWISSENSCHAFTEN