标题
Satellite DNA evolution in Corvoidea inferred from short and long reads
作者
关键词
-
出版物
MOLECULAR ECOLOGY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2022-04-30
DOI
10.1111/mec.16484
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The complete sequence of a human genome
- (2022) Sergey Nurk et al. SCIENCE
- A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
- (2021) Jing Liu et al. GENOME RESEARCH
- The structure, function and evolution of a complete human chromosome 8
- (2021) Glennis A. Logsdon et al. NATURE
- The Role of Human Centromeric RNA in Chromosome Stability
- (2021) Simon Leclerc et al. Frontiers in Molecular Biosciences
- Defective Satellite DNA Clustering into Chromocenters Underlies Hybrid Incompatibility in Drosophila
- (2021) Madhav Jagannathan et al. MOLECULAR BIOLOGY AND EVOLUTION
- The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities
- (2021) Valentina Peona et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The genetic and epigenetic landscape of the Arabidopsis centromeres
- (2021) Matthew Naish et al. SCIENCE
- What makes a centromere?
- (2020) Paul B. Talbert et al. EXPERIMENTAL CELL RESEARCH
- Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
- (2020) Octavio M Palacios-Gimenez et al. Genome Biology and Evolution
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovery and population genomics of structural variation in a songbird genus
- (2020) Matthias H. Weissensteiner et al. Nature Communications
- Centromere studies in the era of ‘telomere-to-telomere’ genomics
- (2020) Karen H. Miga EXPERIMENTAL CELL RESEARCH
- Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
- (2020) Valentina Peona et al. Molecular Ecology Resources
- Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2
- (2020) Petr Novák et al. Nature Protocols
- Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
- (2019) Stefan Prost et al. GigaScience
- Centromere Repeats: Hidden Gems of the Genome
- (2019) Gabrielle Hartley et al. Genes
- Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise
- (2019) Ofir Raz et al. NUCLEIC ACIDS RESEARCH
- A centromere satellite concomitant with extensive karyotypic diversity across the Peromyscus genus defies predictions of molecular drive
- (2019) Brendan M. Smalec et al. CHROMOSOME RESEARCH
- Earth history and the passerine superradiation
- (2019) Carl H. Oliveros et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch
- (2019) Jesper Boman et al. Genes
- Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
- (2019) Luohao Xu et al. Nature Ecology & Evolution
- Chromosomics: Bridging the Gap between Genomes and Chromosomes
- (2019) Janine E. Deakin et al. Genes
- Purifying Selection in Corvids Is Less Efficient on Islands
- (2019) Verena E Kutschera et al. MOLECULAR BIOLOGY AND EVOLUTION
- FlexiDot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- (2018) Kathrin M Seibt et al. BIOINFORMATICS
- High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats
- (2018) Francisco J. Ruiz-Ruano et al. CHROMOSOMA
- Satellite DNA evolution: old ideas, new approaches
- (2018) Sarah Sander Lower et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Double insertion of transposable elements provides a substrate for the evolution of satellite DNA
- (2018) Michael P. McGurk et al. GENOME RESEARCH
- Non-B-Form DNA Is Enriched at Centromeres
- (2018) Sivakanthan Kasinathan et al. MOLECULAR BIOLOGY AND EVOLUTION
- Linear assembly of a human centromere on the Y chromosome
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- How complete are “complete” genome assemblies?-An avian perspective
- (2018) Valentina Peona et al. Molecular Ecology Resources
- Characterization of the satellitome in lower vascular plants: the case of the endangered fern Vandenboschia speciosa
- (2018) F J Ruiz-Ruano et al. ANNALS OF BOTANY
- Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
- (2017) Matthias H. Weissensteiner et al. GENOME RESEARCH
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Dissecting the Satellite DNA Landscape in Three Cactophilic Drosophila Sequenced Genomes
- (2017) Leonardo G. de Lima et al. G3-Genes Genomes Genetics
- High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis
- (2017) Octavio Manuel Palacios-Gimenez et al. Scientific Reports
- Machine learning model for sequence-driven DNA G-quadruplex formation
- (2017) Aleksandr B. Sahakyan et al. Scientific Reports
- Transcription brings the complex(ity) to the centromere
- (2016) Andrew W. Grenfell et al. CELL CYCLE
- Mind the gap; seven reasons to close fragmented genome assemblies
- (2016) Bart P.H.J. Thomma et al. FUNGAL GENETICS AND BIOLOGY
- A supermatrix phylogeny of corvoid passerine birds (Aves: Corvides)
- (2016) Knud Andreas Jønsson et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
- (2016) Nagarjun Vijay et al. Nature Communications
- High-throughput analysis of the satellitome illuminates satellite DNA evolution
- (2016) Francisco J. Ruiz-Ruano et al. Scientific Reports
- GC-biased gene conversion links the recombination landscape and demography to genomic base composition
- (2015) Carina F. Mugal et al. BIOESSAYS
- Structural and functional liaisons between transposable elements and satellite DNAs
- (2015) Nevenka Meštrović et al. CHROMOSOME RESEARCH
- Satellite DNA in Plants: More than Just Rubbish
- (2015) Manuel A. Garrido-Ramos CYTOGENETIC AND GENOME RESEARCH
- The Avian Hybrids Project: gathering the scientific literature on avian hybridization
- (2015) Jente Ottenburghs et al. IBIS
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- A unique chromatin complex occupies young -satellite arrays of human centromeres
- (2015) J. G. Henikoff et al. Science Advances
- The organization and evolution of the Responder satellite in species of the Drosophila melanogaster group: dynamic evolution of a target of meiotic drive
- (2014) Amanda M Larracuente BMC EVOLUTIONARY BIOLOGY
- All chromosomes great and small: 10 years on
- (2014) Darren Griffin et al. CHROMOSOME RESEARCH
- Mitotic misbehavior of a Drosophila melanogaster satellite in ring chromosomes: insights into intragenomic conflict among heterochromatic sequences
- (2014) Patrick M Ferree FLY
- Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis
- (2014) Guilherme B. Dias et al. Genome Biology and Evolution
- The genomic landscape underlying phenotypic integrity in the face of gene flow in crows
- (2014) J. W. Poelstra et al. SCIENCE
- Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype
- (2013) Carina F. Mugal et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
- (2013) Daniël P Melters et al. GENOME BIOLOGY
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Active transcription and essential role of RNA polymerase II at the centromere during mitosis
- (2012) F. L. Chan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Satellite DNA-Like Elements Associated With Genes Within Euchromatin of the Beetle Tribolium castaneum
- (2012) Josip Brajković et al. G3-Genes Genomes Genetics
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- The 1.688 Repetitive DNA of Drosophila: Concerted Evolution at Different Genomic Scales and Association with Genes
- (2011) Gustavo C. S. Kuhn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies
- (2010) Kateřina Ambrožová et al. ANNALS OF BOTANY
- Y Not a Dead End: Epistatic Interactions Between Y- Linked Regulatory Polymorphisms and Genetic Background Affect Global Gene Expression in Drosophila melanogaster
- (2010) Pan-Pan Jiang et al. GENETICS
- Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences
- (2010) W.-H. Shang et al. GENOME RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- An unexpectedly long history of sexual selection in birds-of-paradise
- (2009) Martin Irestedt et al. BMC EVOLUTIONARY BIOLOGY
- Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila
- (2009) Patrick M. Ferree et al. PLOS BIOLOGY
- The Vienna RNA Websuite
- (2008) A. R. Gruber et al. NUCLEIC ACIDS RESEARCH
- Birds of paradise, biogeography and ecology in New Guinea: a review
- (2003) Michael Heads JOURNAL OF BIOGEOGRAPHY
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