Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep‐sea hydrothermal gastropod Ifremeria nautilei

Differential patterns of connectivity in Western Pacific hydrothermal vent metapopulations: A comparison of biophysical and genetic models

(2021) Corinna Breusing et al.   Evolutionary Applications

Allopatric and sympatric drivers of speciation in Alviniconcha hydrothermal vent snails

(2020) Corinna Breusing et al.   MOLECULAR BIOLOGY AND EVOLUTION

One panel to rule them all: DArTcap genotyping for population structure, historical demography, and kinship analyses, and its application to a threatened shark

(2020) Pierre Feutry et al.   Molecular Ecology Resources

How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels

(2020) Alexis Simon et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish

(2020) Tony Robinet et al.   MOLECULAR ECOLOGY

Population connectivity of the hydrothermal-vent limpet Shinkailepas tollmanni in the Southwest Pacific (Gastropoda: Neritimorpha: Phenacolepadidae)

(2020) Takuya Yahagi et al.   PLoS One

Amplicon sequencing of 42 nuclear loci supports directional gene flow between South Pacific populations of a hydrothermal vent limpet

(2019) Sophie Plouviez et al.   Ecology and Evolution

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review

(2018) Hugo Cayuela et al.   MOLECULAR ECOLOGY

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

(2017) Clément Rougeux et al.   Genome Biology and Evolution

Boiling vapour-type fluids from the Nifonea vent field (New Hebrides Back-Arc, Vanuatu, SW Pacific): Geochemistry of an early-stage, post-eruptive hydrothermal system

(2017) Katja Schmidt et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Population connectivity of hydrothermal-vent limpets along the northern Mid-Atlantic Ridge (Gastropoda: Neritimorpha: Phenacolepadidae)

(2017) Takuya Yahagi et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre

(2017) Stephanie A. Sommer et al.   MOLECULAR ECOLOGY

Biophysical and Population Genetic Models Predict the Presence of “Phantom” Stepping Stones Connecting Mid-Atlantic Ridge Vent Ecosystems

(2016) Corinna Breusing et al.   CURRENT BIOLOGY

Extensive hydrothermal activity revealed by multi-tracer survey in the Wallis and Futuna region (SW Pacific)

(2016) C. Konn et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Identifying patterns of dispersal, connectivity and selection in the sea scallop,Placopecten magellanicus,using RADseq-derived SNPs

(2016) Mallory Van Wyngaarden et al.   Evolutionary Applications

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Quantifying dispersal from hydrothermal vent fields in the western Pacific Ocean

(2016) Satoshi Mitarai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Molluscan Larval Form: Brooding and Development in a Hydrothermal Vent Gastropod, Ifremeria nautilei (Provannidae)

(2016) Kyle C. Reynolds et al.   BIOLOGICAL BULLETIN

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

(2015) Pierre-Alexandre Gagnaire et al.   Evolutionary Applications

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex

(2015) A Brelsford et al.   HEREDITY

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

(2015) Christelle Fraïsse et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Comparative Population Structure of Two Deep-Sea Hydrothermal-Vent-Associated Decapods (Chorocaris sp. 2 and Munidopsis lauensis) from Southwestern Pacific Back-Arc Basins

(2014) Andrew David Thaler et al.   PLoS One

Larvae from deep-sea methane seeps disperse in surface waters

(2014) S. M. Arellano et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

The Southwest Pacific Ocean circulation and climate experiment (SPICE)

(2014) A. Ganachaud et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Genetic diversity of hydrothermal-vent barnacles in Manus Basin

(2013) Sophie Plouviez et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

Population Differentiation and Species Formation in the Deep Sea: The Potential Role of Environmental Gradients and Depth

(2013) Robert M. Jennings et al.   PLoS One

A New Barrier to Dispersal Trapped Old Genetic Clines That Escaped the Easter Microplate Tension Zone of the Pacific Vent Mussels

(2013) Sophie Plouviez et al.   PLoS One

A 2 million year glacial chronology of the Hatherton Glacier, Antarctica and implications for the size of the East Antarctic Ice Sheet at the Last Glacial Maximum

(2013) Kurt Joy et al.   QUATERNARY SCIENCE REVIEWS

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Panmixia in a Fragmented and Unstable Environment: The Hydrothermal Shrimp Rimicaris exoculata Disperses Extensively along the Mid-Atlantic Ridge

(2012) Sara Teixeira et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific

(2011) Andrew D Thaler et al.   BMC EVOLUTIONARY BIOLOGY

The abundance of seafloor massive sulfide deposits

(2011) M. Hannington et al.   GEOLOGY

Larval Transport Modeling of Deep-Sea Invertebrates Can Aid the Search for Undiscovered Populations

(2011) Jon M. Yearsley et al.   PLoS One

Late Pleistocene glaciation of the Mt Giluwe volcano, Papua New Guinea

(2011) Timothy T. Barrows et al.   QUATERNARY SCIENCE REVIEWS

WHEN GAPS REALLY ARE GAPS: STATISTICAL PHYLOGEOGRAPHY OF HYDROTHERMAL VENT INVERTEBRATES

(2010) Asta Audzijonyte et al.   EVOLUTION

USING ISOLATION BY DISTANCE AND EFFECTIVE DENSITY TO ESTIMATE DISPERSAL SCALES IN ANEMONEFISH

(2010) Malin L. Pinsky et al.   EVOLUTION

Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge

(2010) Sara Teixeira et al.   JOURNAL OF BIOGEOGRAPHY

What can genetics tell us about population connectivity?

(2010) WINSOR H. LOWE et al.   MOLECULAR ECOLOGY

Genetic diversity and connectivity of deep-sea hydrothermal vent metapopulations

(2010) ROBERT C. VRIJENHOEK   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Larvae from afar colonize deep-sea hydrothermal vents after a catastrophic eruption

(2010) Lauren S. Mullineaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Comparative phylogeography among hydrothermal vent species along the East Pacific Rise reveals vicariant processes and population expansion in the South

(2009) S. PLOUVIEZ et al.   MOLECULAR ECOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Reproduction of Gastropods from Vents on the East Pacific Rise and the Mid-Atlantic Ridge

(2008) Paul A. Tyler et al.   JOURNAL OF SHELLFISH RESEARCH