标题
Systematic analysis of intrinsic enhancer-promoter compatibility in the mouse genome
作者
关键词
enhancer, promoter, cis, -regulatory element, MPRA, combinatorial, systematic, transcription, compatibility, specificity
出版物
MOLECULAR CELL
Volume -, Issue -, Pages -
出版商
Elsevier BV
发表日期
2022-04-29
DOI
10.1016/j.molcel.2022.04.009
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Sequence determinants of human gene regulatory elements
- (2022) Biswajyoti Sahu et al. NATURE GENETICS
- Compatibility rules of human enhancer and promoter sequences
- (2022) Drew T. Bergman et al. NATURE
- Transcriptional Silencers: Driving Gene Expression with the Brakes On
- (2021) Julian A. Segert et al. TRENDS IN GENETICS
- Augmenting and directing long-range CRISPR-mediated activation in human cells
- (2021) Y. Esther Tak et al. NATURE METHODS
- Systematic identification of silencers in human cells
- (2020) Baoxu Pang et al. NATURE GENETICS
- Synthetic and genomic regulatory elements reveal aspects of cis-regulatory grammar in Mouse Embryonic Stem Cells
- (2020) Dana M King et al. eLife
- Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
- (2020) Tsung-Han S. Hsieh et al. MOLECULAR CELL
- Expanded encyclopaedias of DNA elements in the human and mouse genomes
- (2020) Jill E. Moore et al. NATURE
- HRT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
- (2020) Bidossessi Wilfried Hounkpe et al. NUCLEIC ACIDS RESEARCH
- Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays
- (2020) Jessica E. Davis et al. Cell Systems
- Dense and pleiotropic regulatory information in a developmental enhancer
- (2020) Timothy Fuqua et al. NATURE
- A systematic evaluation of the design and context dependencies of massively parallel reporter assays
- (2020) Jason C. Klein et al. NATURE METHODS
- Transcriptional cofactors display specificity for distinct types of core promoters
- (2019) Vanja Haberle et al. NATURE
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Regulatory Landscaping: How Enhancer-Promoter Communication Is Sculpted in 3D
- (2019) Michael I. Robson et al. MOLECULAR CELL
- High-throughput identification of human SNPs affecting regulatory element activity
- (2019) Joris van Arensbergen et al. NATURE GENETICS
- A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
- (2019) Laila El Khattabi et al. CELL
- Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts
- (2019) Stephen S. Gisselbrecht et al. MOLECULAR CELL
- Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution
- (2019) Martin Kircher et al. Nature Communications
- Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells
- (2018) Tahsin Stefan Barakat et al. Cell Stem Cell
- GENCODE reference annotation for the human and mouse genomes
- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
- (2016) Hannah K. Long et al. CELL
- Dissection of transcriptional andcis‐regulatory control of differentiation in human pancreatic cancer
- (2016) Giuseppe R Diaferia et al. EMBO JOURNAL
- Genome-wide mapping of autonomous promoter activity in human cells
- (2016) Joris van Arensbergen et al. NATURE BIOTECHNOLOGY
- Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution
- (2016) Cosmas D Arnold et al. NATURE BIOTECHNOLOGY
- Regulatory Enhancer–Core-Promoter Communication via Transcription Factors and Cofactors
- (2016) Muhammad A. Zabidi et al. TRENDS IN GENETICS
- Super-Enhancers at the Nanog Locus Differentially Regulate Neighboring Pluripotency-Associated Genes
- (2016) Steven Blinka et al. Cell Reports
- Starcode: sequence clustering based on all-pairs search
- (2015) Eduard Zorita et al. BIOINFORMATICS
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency
- (2015) Onkar Joshi et al. Cell Stem Cell
- Decoding enhancers using massively parallel reporter assays
- (2015) Fumitaka Inoue et al. GENOMICS
- ETS-related Transcription Factors ETV4 and ETV5 Are Involved in Proliferation and Induction of Differentiation-associated Genes in Embryonic Stem (ES) Cells
- (2015) Tadayuki Akagi et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- dbSUPER: a database of super-enhancers in mouse and human genome
- (2015) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation
- (2014) Muhammad A. Zabidi et al. NATURE
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- In search of the determinants of enhancer–promoter interaction specificity
- (2014) Joris van Arensbergen et al. TRENDS IN CELL BIOLOGY
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
- (2012) Wulan Deng et al. CELL
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- FOXO1 is an essential regulator of pluripotency in human embryonic stem cells
- (2011) Xin Zhang et al. NATURE CELL BIOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Enhancer-promoter communication at the Drosophila engrailed locus
- (2009) D. Kwon et al. DEVELOPMENT
- Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
- (2009) Jochen Gehrig et al. NATURE METHODS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Klf4 Directly Interacts with Oct4 and Sox2 to Promote Reprogramming
- (2009) Zong Wei et al. STEM CELLS
- BatchPrimer3: A high throughput web application for PCR and sequencing primer design
- (2008) Frank M You et al. BMC BIOINFORMATICS
- An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
- (2008) Jonghwan Kim et al. CELL
- Caudal, a key developmental regulator, is a DPE-specific transcriptional factor
- (2008) T. Juven-Gershon et al. GENES & DEVELOPMENT
- Exchange of GATA Factors Mediates Transitions in Looped Chromatin Organization at a Developmentally Regulated Gene Locus
- (2008) Huie Jing et al. MOLECULAR CELL
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started