SynBioStrainFinder: A microbial strain database of manually curated CRISPR/Cas genetic manipulation system information for biomanufacturing

CRISPRi System as an Efficient, Simple Platform for Rapid Identification of Genes Involved in Pollutant Transformation by Aeromonas hydrophila

(2020) Jie Wu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The CRISPR toolbox in medical mycology: State of the art and perspectives

(2020) Florent Morio et al.   PLoS Pathogens

Establishment of CRISPR interference in Methylorubrum extorquens and application of rapidly mining a new phytoene desaturase involved in carotenoid biosynthesis

(2020) Xu-Hua Mo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Highly efficient genome editing in N. gerenzanensis using an inducible CRISPR/Cas9–RecA system

(2020) Xue Yue et al.   BIOTECHNOLOGY LETTERS

Computational Tools and Resources Supporting CRISPR-Cas Experiments

(2020) Pawel Sledzinski et al.   Cells

Industrial biotechnology of Pseudomonas putida: advances and prospects

(2020) Anna Weimer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Cell2Chem: Mining Explored and Unexplored Biosynthetic Chemical Spaces

(2020) Dongliang Liu et al.   BIOINFORMATICS

Engineering of natural product biosynthesis in Pseudomonas putida

(2020) Anita Loeschcke et al.   CURRENT OPINION IN BIOTECHNOLOGY

Highly efficient single base editing in Aspergillus niger with CRISPR/Cas9 cytidine deaminase fusion

(2019) Lianggang Huang et al.   MICROBIOLOGICAL RESEARCH

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

(2019) Kunling Chen et al.   Annual Review of Plant Biology

Application of the CRISPR/Cas system for genome editing in microalgae

(2019) Yu-Ting Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pichia pastoris as a versatile cell factory for the production of industrial enzymes and chemicals: current status and future perspectives

(2019) Taicheng Zhu et al.   Biotechnology Journal

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

(2019) Kornel Labun et al.   NUCLEIC ACIDS RESEARCH

Bacillus subtilis

(2019) Ákos T. Kovács   TRENDS IN MICROBIOLOGY

CRISPR-Cas bioinformatics

(2019) Omer S. Alkhnbashi et al.   METHODS

Recent advances in plasmid-based tools for establishing novel microbial chassis

(2019) Luísa Czamanski Nora et al.   BIOTECHNOLOGY ADVANCES

CF-Targeter: A Rational Biological Cell Factory Targeting Platform for Biosynthetic Target Chemicals

(2019) Shaozhen Ding et al.   ACS Synthetic Biology

Genome Engineering of Eubacterium limosum Using Expanded Genetic Tools and the CRISPR-Cas9 System

(2019) Jongoh Shin et al.   ACS Synthetic Biology

Database resources of the National Center for Biotechnology Information

(2019) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces cerevisiae

(2019) Ignacio Belda et al.   TRENDS IN GENETICS

Escherichia coli as a host for metabolic engineering

(2018) Sammy Pontrelli et al.   METABOLIC ENGINEERING

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans -metabolism

(2018) Pablo I. Nikel et al.   METABOLIC ENGINEERING

Metabolic engineering of Pichia pastoris

(2018) David A. Peña et al.   METABOLIC ENGINEERING

CRISPR/Cas9 editing genome of extremophile Halomonas spp.

(2018) Qin Qin et al.   METABOLIC ENGINEERING

Gene repression via multiplex gRNA strategy in Y. lipolytica

(2018) Jin-lai Zhang et al.   Microbial Cell Factories

Candida albicans - Biology, molecular characterization, pathogenicity, and advances in diagnosis and control – An update

(2018) Maryam Dadar et al.   MICROBIAL PATHOGENESIS

Metabolic principles of persistence and pathogenicity in Mycobacterium tuberculosis

(2018) Sabine Ehrt et al.   NATURE REVIEWS MICROBIOLOGY

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens

(2018) Jean-Paul Concordet et al.   NUCLEIC ACIDS RESEARCH

History of genome editing in yeast

(2018) Marcin G. Fraczek et al.   YEAST

The CRISPR tool kit for genome editing and beyond

(2018) Mazhar Adli   Nature Communications

High GC Content Cas9-Mediated Genome-Editing and Biosynthetic Gene Cluster Activation in Saccharopolyspora erythraea

(2018) Yong Liu et al.   ACS Synthetic Biology

Review of CRISPR/Cas9 sgRNA Design Tools

(2018) Yingbo Cui et al.   Interdisciplinary Sciences-Computational Life Sciences

CRISPR-Cpf1-Assisted Multiplex Genome Editing and Transcriptional Repression in Streptomyces

(2018) Lei Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Precise and efficient genome editing in Klebsiella pneumoniae using CRISPR-Cas9 and CRISPR-assisted cytidine deaminase

(2018) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficient CRISPR–Cas9 mediated multiplex genome editing in yeasts

(2018) Laiyou Wang et al.   Biotechnology for Biofuels

Synthetic Biology Toolbox and Chassis Development in Bacillus subtilis

(2018) Yanfeng Liu et al.   TRENDS IN BIOTECHNOLOGY

Rapid and Efficient Genome Editing in Staphylococcus aureus by Using an Engineered CRISPR/Cas9 System

(2017) Weizhong Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae

(2017) Michal A. Świat et al.   NUCLEIC ACIDS RESEARCH

CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum

(2017) Yu Jiang et al.   Nature Communications

CRISPR/Cas9 in Genome Editing and Beyond

(2016) Haifeng Wang et al.   Annual Review of Biochemistry

Metabolic Engineering of Probiotic Saccharomyces boulardii

(2016) Jing-Jing Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide

(2016) Linhuan Wu et al.   NUCLEIC ACIDS RESEARCH

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering

(2016) Kornel Labun et al.   NUCLEIC ACIDS RESEARCH

Synthetic RNA Polymerase III Promoters Facilitate High-Efficiency CRISPR–Cas9-Mediated Genome Editing in Yarrowia lipolytica

(2016) Cory M. Schwartz et al.   ACS Synthetic Biology

One-step high-efficiency CRISPR/Cas9-mediated genome editing in Streptomyces

(2015) He Huang et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Databases for Microbiologists: TABLE 1

(2015) Igor B. Zhulin   JOURNAL OF BACTERIOLOGY

Applications of CRISPR–Cas systems in neuroscience

(2015) Matthias Heidenreich et al.   NATURE REVIEWS NEUROSCIENCE

Harnessing the landscape of microbial culture media to predict new organism–media pairings

(2015) Matthew A. Oberhardt et al.   Nature Communications

Web Resources for Microbial Data

(2015) Qinglan Sun et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Addgene repository: an international nonprofit plasmid and data resource

(2014) Joanne Kamens   NUCLEIC ACIDS RESEARCH

CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing

(2014) Tessa G. Montague et al.   NUCLEIC ACIDS RESEARCH

Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources

(2013) Linhuan Wu et al.   BMC GENOMICS

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering

(2013) Thomas Gaj et al.   TRENDS IN BIOTECHNOLOGY

Pseudomonas aeruginosa: new insights into pathogenesis and host defenses

(2013) Shaan L. Gellatly et al.   Pathogens and Disease

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

(2010) Luciano A. Marraffini et al.   NATURE REVIEWS GENETICS