Impact of phosphate concentration on the metabolome of biofilms of the marine bacterium Pseudoalteromonas lipolytica

A Practical Guide to Metabolomics Software Development

(2021) Hui-Yin Chang et al.   ANALYTICAL CHEMISTRY

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

(2020) Allegra T. Aron et al.   Nature Protocols

Biofilm Matrixome: Extracellular Components in Structured Microbial Communities

(2020) L. Karygianni et al.   TRENDS IN MICROBIOLOGY

The role of oxidized phospholipids in the development of disease

(2020) Ji Nie et al.   MOLECULAR ASPECTS OF MEDICINE

Integration of LC/MS-based molecular networking and classical phytochemical approach allows in-depth annotation of the metabolome of non-model organisms - The case study of the brown seaweed Taonia atomaria

(2020) Nathan Carriot et al.   TALANTA

Intra-clade metabolomic profiling of MAR4 Streptomyces from the Macaronesia Atlantic region reveals a source of anti-biofilm metabolites

(2019) Anelize Bauermeister et al.   ENVIRONMENTAL MICROBIOLOGY

Redox (phospho)lipidomics of signaling in inflammation and programmed cell death

(2019) Yulia Y. Tyurina et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Phosphate deficiency induced biofilm formation of Burkholderia on insoluble phosphate granules plays a pivotal role for maximum release of soluble phosphate

(2019) Ranjan Ghosh et al.   Scientific Reports

CANPA: Computer-Assisted Natural Products Anticipation

(2019) Alexander E. Fox Ramos et al.   ANALYTICAL CHEMISTRY

Metabolome and proteome changes between biofilm and planktonic phenotypes of the marine bacterium Pseudoalteromonas lipolytica TC8

(2018) Laurie Favre et al.   BIOFOULING

Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation

(2018) Louis-Félix Nothias et al.   JOURNAL OF NATURAL PRODUCTS

Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies

(2018) David Broadhurst et al.   Metabolomics

Accumulation of ornithine lipids in Vibrio cholerae under phosphate deprivation is dependent on VC0489 (OlsF) and PhoBR system

(2018) Livia C. Barbosa et al.   MICROBIOLOGY-SGM

Organic phosphorus in atmospheric deposition over the Mediterranean Sea: An important missing piece of the phosphorus cycle

(2018) Kalliopi Violaki et al.   PROGRESS IN OCEANOGRAPHY

Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics

(2018) Romanas Chaleckis et al.   CURRENT OPINION IN BIOTECHNOLOGY

Development and validation of a UHPLC-ESI-MS/MS method for the simultaneous quantification of mammal lysophosphatidylcholines and lysophosphatidylethanolamines in serum

(2017) Susana Suárez-García et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Discrimination of Four Marine Biofilm-Forming Bacteria by LC–MS Metabolomics and Influence of Culture Parameters

(2017) Laurie Favre et al.   JOURNAL OF PROTEOME RESEARCH

Spatiotemporal Variability in Phosphorus Species in the Pearl River Estuary: Influence of the River Discharge

(2017) Ruihuan Li et al.   Scientific Reports

Complete structural characterization of ceramides as [M−H]− ions by multiple-stage linear ion trap mass spectrometry

(2016) Fong-Fu Hsu   BIOCHIMIE

Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms

(2016) Jasmin C. Lawes et al.   BIOFOULING

Spatial variability of phosphate and nitrate in the Mediterranean Sea: A modeling approach

(2016) P. Lazzari et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Spotlight on Antimicrobial Metabolites from the Marine Bacteria Pseudoalteromonas: Chemodiversity and Ecological Significance

(2016) Clément Offret et al.   Marine Drugs

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Biofilms: an emergent form of bacterial life

(2016) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Elucidation and identification of amino acid containing membrane lipids using liquid chromatography/high-resolution mass spectrometry

(2016) Eli K. Moore et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency

(2015) Marta Sebastián et al.   ISME Journal

Rapid and Reliable Identification of Phospholipids for Untargeted Metabolomics with LC–ESI–QTOF–MS/MS

(2015) Joanna Godzien et al.   JOURNAL OF PROTEOME RESEARCH

Microbial Surface Colonization and Biofilm Development in Marine Environments

(2015) Hongyue Dang et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

PLS/OPLS models in metabolomics: the impact of permutation of dataset rows on the K-fold cross-validation quality parameters

(2015) Mohamed N. Triba et al.   Molecular BioSystems

SAR11 lipid renovation in response to phosphate starvation

(2015) Paul Carini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasticity of Streptomyces coelicolor Membrane Composition Under Different Growth Conditions and During Development

(2015) Mario Sandoval-Calderón et al.   Frontiers in Microbiology

Microbially Mediated Transformations of Phosphorus in the Sea: New Views of an Old Cycle

(2014) David M. Karl   Annual Review of Marine Science

Accumulation of Novel Glycolipids and Ornithine Lipids in Mesorhizobium loti under Phosphate Deprivation

(2014) Hannah Diercks et al.   JOURNAL OF BACTERIOLOGY

Identification of Bacterial Strains Isolated from the Mediterranean Sea Exhibiting Different Abilities of Biofilm Formation

(2014) Florence Brian-Jaisson et al.   MICROBIAL ECOLOGY

Total phosphorus distribution over the Baltic Sea sub-regions

(2014) G. T. Frumin   RUSSIAN JOURNAL OF GENERAL CHEMISTRY

Heterogeneity in the nutrient limitation of different bacterioplankton groups in the Eastern Mediterranean Sea

(2013) Marta Sebastián et al.   ISME Journal

XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data

(2012) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

Adjusting membrane lipids under salt stress: the case of the moderate halophilic organismHalobacillus halophilus

(2012) Patrizia Lopalco et al.   ENVIRONMENTAL MICROBIOLOGY

Ornithine lipids and their structural modifications: from A to E and beyond

(2012) Miguel Á. Vences-Guzmán et al.   FEMS MICROBIOLOGY LETTERS

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

The olsA gene mediates the synthesis of an ornithine lipid in Pseudomonas aeruginosa during growth under phosphate-limiting conditions, but is not involved in antimicrobial peptide susceptibility

(2011) Shawn Lewenza et al.   FEMS MICROBIOLOGY LETTERS

Antifouling activity of commercial biocides vs. natural and natural-derived products assessed by marine bacteria adhesion bioassay

(2011) Mercedes Camps et al.   MARINE POLLUTION BULLETIN

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Bacterial Exopolysaccharides from Extreme Marine Habitats: Production, Characterization and Biological Activities

(2010) Annarita Poli et al.   Marine Drugs

Mass spectrometric analysis of long-chain lipids

(2010) Robert C. Murphy et al.   MASS SPECTROMETRY REVIEWS

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity

(2009) Benjamin A. S. Van Mooy et al.   NATURE

Amino acid-containing membrane lipids in bacteria

(2009) Otto Geiger et al.   PROGRESS IN LIPID RESEARCH

Characterization of ornithine and glutamine lipids extracted from cell membranes of Rhodobacter sphaeroides

(2008) Xi Zhang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY