Liver transcriptome analysis reveals biological pathways and transcription factors in response to high ammonia exposure

ACTG1 regulates intervertebral disc degeneration via the NF-κB-p65 and Akt pathways

(2021) Tongde Wu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

UBXN7 cofactor of CRL3KEAP1 and CRL2VHL ubiquitin ligase complexes mediates reciprocal regulation of NRF2 and HIF-1α proteins

(2021) Jacopo Di Gregorio et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Excessive ammonia inhalation causes liver damage and dysfunction by altering gene networks associated with oxidative stress and immune function

(2021) Xiangyin Zeng et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Porcine Liver Anatomy Applied to Biomedicine

(2020) Eberlova Lada et al.   JOURNAL OF SURGICAL RESEARCH

COX10-AS1 Facilitates Cell Proliferation and Inhibits Cell Apoptosis in Glioblastoma Cells at Post-Transcription Level

(2020) Chaoyang Zhou et al.   NEUROCHEMICAL RESEARCH

De Novo KAT5 Variants Cause a Syndrome with Recognizable Facial Dysmorphisms, Cerebellar Atrophy, Sleep Disturbance, and Epilepsy

(2020) Jonathan Humbert et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Oxidative stress and mitochondrial dysfunction involved in ammonia-induced nephrocyte necroptosis in chickens

(2020) Qi Han et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The involvement of miR-6615-5p/Smad7 axis and immune imbalance in ammonia-caused inflammatory injury via NF-κB pathway in broiler kidneys

(2020) Qi Han et al.   POULTRY SCIENCE

The effect of ammonia exposure on energy metabolism and mitochondrial dynamic proteins in chicken thymus: Through oxidative stress, apoptosis, and autophagy

(2020) Syed Waqas Ali Shah et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Ammonia exposure causes lung injuries and disturbs pulmonary circadian clock gene network in a pig study

(2020) Xiaotong Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The evaluation of potential immunotoxicity induced by environmental pollutant ammonia in broilers

(2019) Yang An et al.   POULTRY SCIENCE

The Variation of Nasal Microbiota Caused by Low Levels of Gaseous Ammonia Exposure in Growing Pigs

(2019) Tongxin Wang et al.   Frontiers in Microbiology

The co-expression of circRNA and mRNA in the thymuses of chickens exposed to ammonia

(2019) Dechun Chen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The Histone Methyltransferase Setdb2 Modulates Macrophage Phenotype and Uric Acid Production in Diabetic Wound Repair

(2019) Andrew S. Kimball et al.   IMMUNITY

Ammonia inhalation-mediated mir-202-5p leads to cardiac autophagy through PTEN/AKT/mTOR pathway

(2019) Houjuan Xing et al.   CHEMOSPHERE

Effect of dietary coarse corn inclusion on broiler live performance, litter characteristics, and ammonia emission

(2019) Lingjuan Wang-Li et al.   POULTRY SCIENCE

miR-187-5p/apaf-1 axis was involved in oxidative stress-mediated apoptosis caused by ammonia via mitochondrial pathway in chicken livers

(2019) Yanmin Xu et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Ammonia production in poultry houses can affect health of humans, birds, and the environment—techniques for its reduction during poultry production

(2018) Sadia Naseem et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Sensitive and Selective NH3 Monitoring at Room Temperature Using ZnO Ceramic Nanofibers Decorated with Poly(styrene sulfonate)

(2018) Rafaela Andre et al.   SENSORS

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

Ammonia induces Treg/Th1 imbalance with triggered NF-κB pathway leading to chicken respiratory inflammation response

(2018) Qunxiang Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions

(2017) Heonjong Han et al.   NUCLEIC ACIDS RESEARCH

High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq

(2016) Bao Yi et al.   BMC GENOMICS

Circadian Clock Control of Liver Metabolic Functions

(2016) Hans Reinke et al.   GASTROENTEROLOGY

Frameshift Mutations in the Mononucleotide Repeats of TAF1 and TAF1L Genes in Gastric and Colorectal Cancers with Regional Heterogeneity

(2016) Hye Rim Oh et al.   PATHOLOGY & ONCOLOGY RESEARCH

RB1 dual role in proliferation and apoptosis: cell fate control and implications for cancer therapy

(2015) Paola Indovina et al.   Oncotarget

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

cytoHubba: identifying hub objects and sub-networks from complex interactome

(2014) Chia-Hao Chin et al.   BMC Systems Biology

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Chronic ammonia exposure does not influence hepatic gene expression in growing pigs

(2013) Z. Cheng et al.   Animal

Gender-specific association of NFKBIA promoter polymorphisms with the risk of sporadic colorectal cancer

(2013) Shing Cheng Tan et al.   MEDICAL ONCOLOGY

ATF3 inhibits adipocyte differentiation of 3T3-L1 cells

(2012) Min Kyung Jang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Ammonia toxicity to the brain

(2012) Olivier Braissant et al.   JOURNAL OF INHERITED METABOLIC DISEASE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Gene Expression of Hepatic Glucocorticoid Receptor NR3C1 and Correlation with Plasmatic Corticosterone in Italian Chickens

(2010) S. P. Marelli et al.   ANIMAL BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Blood ammonia levels in liver cirrhosis: a clue for the presence of portosystemic collateral veins

(2009) Giovanni Tarantino et al.   BMC GASTROENTEROLOGY

Fos Proteins Suppress Dextran Sulfate Sodium-Induced Colitis through Inhibition of NF- B

(2009) Y. Takada et al.   JOURNAL OF IMMUNOLOGY

Pyruvate into lactate and back: From the Warburg effect to symbiotic energy fuel exchange in cancer cells

(2009) Olivier Feron   RADIOTHERAPY AND ONCOLOGY

Microanatomy of the liver immune system

(2009) Eszter Nemeth et al.   Seminars in Immunopathology

A comprehensive analysis of transcript signatures of the phosphatidylinositol-3 kinase/protein kinase B signal-transduction pathway in prostate cancer

(2008) Olaf J.C. Hellwinkel et al.   BJU INTERNATIONAL