Genomic landscape, polymorphism and possible LINE-associated delivery of G-quadruplex motifs in the bovine genes

G-quadruplex in cancer biology and drug discovery

(2020) Chuya Nakanishi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The regulation and functions of DNA and RNA G-quadruplexes

(2020) Dhaval Varshney et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

G-Quadruplexes at Telomeres: Friend or Foe?

(2020) Tracy M. Bryan   MOLECULES

BGVD: An Integrated Database for Bovine Sequencing Variations and Selective Signatures

(2020) Ningbo Chen et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

G-Quadruplexes in RNA Biology: Recent Advances and Future Directions

(2020) Leïla Dumas et al.   TRENDS IN BIOCHEMICAL SCIENCES

Whole genome experimental maps of DNA G-quadruplexes in multiple species

(2019) Giovanni Marsico et al.   NUCLEIC ACIDS RESEARCH

Thermodynamically stable and genetically unstable G-quadruplexes are depleted in genomes across species

(2019) Emilia Puig Lombardi et al.   NUCLEIC ACIDS RESEARCH

The diverse structural landscape of quadruplexes

(2019) Helen L. Lightfoot et al.   FEBS LETTERS

DNA G-quadruplexes: functional significance in plant and farm animal science

(2019) Georgios C. Stefos et al.   ANIMAL BIOTECHNOLOGY

A guide to computational methods for G-quadruplex prediction

(2019) Emilia Puig Lombardi et al.   NUCLEIC ACIDS RESEARCH

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

(2018) Aniek C. Bouwman et al.   NATURE GENETICS

Identification of G-quadruplex clusters by high-throughput sequencing of whole-genome amplified products with a G-quadruplex ligand

(2018) Wataru Yoshida et al.   Scientific Reports

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

(2018) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells

(2018) Sunny Y. Yang et al.   Nature Communications

1000 Bull Genomes Project to Map Simple and Complex Genetic Traits in Cattle: Applications and Outcomes

(2018) Ben J. Hayes et al.   Annual Review of Animal Biosciences

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential

(2017) Robert Hänsel-Hertsch et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Cancer-associated noncoding mutations affect RNA G-quadruplex-mediated regulation of gene expression

(2017) Mahdi Zeraati et al.   Scientific Reports

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

(2017) E. Bourneuf et al.   Scientific Reports

The Interplay between G-quadruplex and Transcription

(2017) Nayun Kim   CURRENT MEDICINAL CHEMISTRY

G-quadruplex structures mark human regulatory chromatin

(2016) Robert Hänsel-Hertsch et al.   NATURE GENETICS

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome

(2016) Chun Kit Kwok et al.   NATURE METHODS

Transposable elements and G-quadruplexes

(2015) Eduard Kejnovsky et al.   CHROMOSOME RESEARCH

Livestock Models in Translational Medicine

(2015) J. A. Roth et al.   ILAR JOURNAL

Guanine quadruplexes are formed by specific regions of human transposable elements

(2014) Matej Lexa et al.   BMC GENOMICS

Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation

(2014) Xiangjun Du et al.   NUCLEIC ACIDS RESEARCH

Molecular consequences of animal breeding

(2013) Leif Andersson   CURRENT OPINION IN GENETICS & DEVELOPMENT

Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences

(2013) Vineeth Thachappilly Mukundan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

G-quadruplex structures are stable and detectable in human genomic DNA

(2013) Enid Yi Ni Lam et al.   Nature Communications

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Small-molecule–induced DNA damage identifies alternative DNA structures in human genes

(2012) Raphaël Rodriguez et al.   Nature Chemical Biology

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools

(2012) Regina Z. Cer et al.   NUCLEIC ACIDS RESEARCH

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles

(2010) Melissa A. Mullen et al.   NUCLEIC ACIDS RESEARCH

G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae

(2010) John A. Capra et al.   PLoS Computational Biology

Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions

(2010) Jeffrey S Han   Mobile DNA

bioDBnet: the biological database network

(2009) Uma Mudunuri et al.   BIOINFORMATICS

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts

(2009) S. Nakken et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome

(2009) D. L. Adelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

(2008) Johanna Eddy et al.   NUCLEIC ACIDS RESEARCH

G-quadruplexes: the beginning and end of UTRs

(2008) Julian Leon Huppert et al.   NUCLEIC ACIDS RESEARCH

Stability and kinetics of G-quadruplex structures

(2008) A. N. Lane et al.   NUCLEIC ACIDS RESEARCH