Article
Biochemistry & Molecular Biology
Anayat Bhat, Shuang Li, Daniel Hammler, Martin J. Winterhalder, Andreas Marx, Andreas Zumbusch
Summary: The hydrolysis of nucleotides is important for cellular energy, and the transfer of phosphates to proteins is crucial for post-translational modification. A novel fluorogenic adenosine 5'-tetraphosphate (Ap4) analog has been developed for real-time monitoring of ATP hydrolysis within live cells, with potential applications in studying cellular processes involving Ap4 hydrolysis.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Gonzalo Ferreira, Axel Santander, Romina Cardozo, Luisina Chavarria, Lucia Dominguez, Nicolas Mujica, Milagros Benitez, Santiago Sastre, Luis Sobrevia, Garth L. Nicolson
Summary: Inwardly rectifying potassium (Kir) channels are important for maintaining membrane potential and potassium homeostasis. These channels have various subtypes and can be regulated by molecules found in nutrients, such as phosphoinositols, polyamines, and Mg2+. Changes in Kir channels can affect metabolism and the ability to absorb nutrients and electrolytes. The study of nutrigenomics of ion channels is crucial for understanding how diet and nutrients can impact ion channel function, expression, and lead to pathological conditions that affect diet and electrolyte intake.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
(2023)
Article
Multidisciplinary Sciences
Weiwei Yu, Zhen Wang, Xiafei Yu, Yonghui Zhao, Zili Xie, Kailian Zhang, Zhexu Chi, Sheng Chen, Ting Xu, Danlu Jiang, Xingchen Guo, Mobai Li, Jian Zhang, Hui Fang, Dehang Yang, Yuxian Guo, Xuyan Yang, Xue Zhang, Yingliang Wu, Wei Yang, Di Wang
Summary: This study reveals that the Kir2.1 potassium channel regulates macrophage metabolism and inflammatory responses. The activity of this channel affects nutrient uptake and subsequent metabolic reprogramming, which promotes inflammation. Targeting Kir2.1 with drugs can alleviate inflammation triggered by infections. These findings advance our understanding of the role of membrane potential in immune function and provide potential therapeutic strategies for inflammatory diseases.
NATURE COMMUNICATIONS
(2022)
Article
Chemistry, Physical
Pratibha Agarwala, Turban Bera, Dibyendu K. Sasmal
Summary: This study reports the mechanism of interaction between curcumin and bovine serum albumin (BSA) as well as live E. coli cell membrane. The results show the formation of complexes between curcumin and BSA and the bacterial membrane, indicating a strong hydrophobic interaction. These findings shed light on the potential applications of curcumin as a natural therapeutic lead in clinical trials against life-threatening diseases.
Article
Biochemistry & Molecular Biology
Clara Diaz-Garcia, Maria Lourdes Renart, Jose Antonio Poveda, Ana Marcela Giudici, Jose M. Gonzalez-Ros, Manuel Prieto, Ana Coutinho
Summary: The study investigated the allosteric coupling between activation and inactivation processes in K+ channels, specifically in the prokaryotic KcsA channel. By labeling the G116C position with tetramethylrhodamine (TMR) within a W67 KcsA background, the conformational changes of both the inner gate and selectivity filter (SF) were simultaneously monitored using time-resolved homo-Forster Resonance Energy Transfer (homo-FRET) measurements. The results confirmed the allosteric communication between the two gates of KcsA and proposed a simple TMR homo-FRET based ratiometric assay for studying the conformational dynamics associated with the gating of other ion channels.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Multidisciplinary Sciences
Chenfei Hu, Shenghua He, Young Jae Lee, Yuchen He, Edward M. Kong, Hua Li, Mark A. Anastasio, Gabriel Popescu
Summary: The study introduces a method for assessing cell viability without the need for labeling, utilizing deep learning techniques combined with quantitative phase imaging to accurately determine cell survival status without causing damage to the cells.
NATURE COMMUNICATIONS
(2022)
Review
Biochemistry & Molecular Biology
Herbert Schneckenburger
Summary: Laser plays an increasing role in live cell microscopy due to its unique properties. It is used in various techniques such as 3D microscopy, super-resolution microscopy, spectral imaging, and fluorescence lifetime imaging. Laser applications in live cell biology include fluorescence diagnosis, photodynamic therapy, and laser-assisted optoporation.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Medicine, Research & Experimental
Mark A. Bryniarski, Ruben M. Sandoval, Donna M. Ruszaj, John Fraser-McArthur, Benjamin M. Yee, Rabi Yacoub, Lee D. Chaves, Silvia B. Campos-Bilderback, Bruce A. Molitoris, Marilyn E. Morris
Summary: Despite its importance in the pharmacokinetics of therapeutic proteins and peptides, the processes that occur following glomerular filtration are poorly understood. This study aimed to address this issue and develop a methodology to study the renal disposition of a therapeutic protein called exenatide. The results showed that exenatide is primarily cleared through glomerular filtration and subsequent renal catabolism.
MOLECULAR PHARMACEUTICS
(2023)
Review
Biotechnology & Applied Microbiology
Leandro Zuniga, Angel Cayo, Wendy Gonzalez, Cristian Vilos, Rafael Zuniga
Summary: This article summarizes the important role of potassium channels in cancer, including promoting cell proliferation, resistance to apoptosis, metabolic changes, angiogenesis, and migratory capabilities, and discusses strategies for designing new drugs.
ONCOTARGETS AND THERAPY
(2022)
Article
Multidisciplinary Sciences
Yu Xu, Yuchen Yang, Aishwarya Chandrashekar, Kirin D. Gada, Meghan Masotti, Austin M. Baggetta, Jenna G. Connolly, Takeharu Kawano, Leigh D. Plant
Summary: Cardiovascular diseases are the leading cause of death globally, and acute hypoxia disrupts cardiac electrophysiology, leading to heart diseases. Research has found that acute hypoxia activates the SUMO pathway in cardiomyocytes, causing inhibition of the Kir2.1 potassium channel and reducing its activation by PPI2, leading to cardiovascular diseases.
Article
Biochemical Research Methods
Agnes Batta, Timea Hajdu, Peter Nagy
Summary: Forster resonance energy transfer (FRET) is a radiationless interaction used to study protein oligomerization and structure with distance dependence. This study presents a method that improves FRET measurement precision by using microbeads with a calibrated number of antibody binding sites and a donor-acceptor mixture. The proposed method demonstrates superior reproducibility compared to the conventional approach and can be widely applied for the quantification of FRET experiments in biological research.
Article
Biology
Anthony Santella, Irina Kolotuev, Caroline Kizilyaprak, Zhirong Bao
Summary: Analyzing brain development, structure, and function across imaging modalities can provide valuable information. This study combines electron microscopy and time-lapse fluorescence microscopy to study the emergence of the nervous system in Caenorhabditis elegans embryogenesis.
Review
Optics
Verena Richter, Peter Lanzerstorfer, Julian Weghuber, Herbert Schneckenburger
Summary: Methods such as super-resolution microscopy and molecular sensing are used to probe small distances in living cells, with a main requirement being low light exposure for cell viability and avoiding photobleaching. Techniques like SIM, Axial Tomography, and TIRFM, alone or in combination, are employed to measure cell structure and molecular parameters, revealing the sensitivity of cellular signaling processes.
Article
Chemistry, Analytical
Huan Wang, Wencheng Mu, Siying Wang, Yuanyuan Liu, Baocheng Ran, Lin Shi, Tianfeng Ma, Yongchang Lu
Summary: In this study, F-CuNPs were synthesized using a modified liquid-phase chemical reduction method. The F-CuNPs and vitamin B2 showed possible Förster resonance energy transfer (FRET) due to spectral overlap. A FRET system between F-CuNPs and vitamin B2 was designed for the detection of vitamin B2. The system was also used for the detection of S2- based on ratiometric fluorescent probe, showing high sensitivity and selectivity.
Article
Multidisciplinary Sciences
Alice Sandmeyer, Lili Wang, Wolfgang Huebner, Marcel Mueller, Benjamin K. Chen, Thomas Huser
Summary: Cost-effective, highly portable, and easy to use high-resolution live-cell imaging systems can revolutionize research in challenging environments, enabling real-time tracking of virus particles and studying infection mechanisms.
Article
Biochemistry & Molecular Biology
Rebekka Ehinger, Anna Kuret, Lucas Matt, Nadine Frank, Katharina Wild, Clement Kabagema-Bilan, Helmut Bischof, Roland Malli, Peter Ruth, Anne E. Bausch, Robert Lukowski
Summary: The absence of Slack K+ channels renders neurons more susceptible to excitotoxicity caused by NMDAR overstimulation, possibly by promoting pro-survival signaling via the BDNF/TrkB and Erk axis.
Correction
Multidisciplinary Sciences
Helmut Bischof, Sandra Burgstaller, Anna Springer, Lucas Matt, Thomas Rauter, Olaf A. Bachkoenig, Tony Schmidt, Klaus Groschner, Rainer Schindl, Tobias Madl, Nikolaus Plesnila, Robert Lukowski, Wolfgang F. Graier, Roland Malli
Article
Multidisciplinary Sciences
Helmut Bischof, Sandra Burgstaller, Anna Springer, Lucas Matt, Thomas Rauter, Olaf A. Bachkoenig, Tony Schmidt, Klaus Groschner, Rainer Schindl, Tobias Madl, Nikolaus Plesnila, Robert Lukowski, Wolfgang F. Graier, Roland Malli
Summary: Research has shown that the activity of HKII requires intracellular K+, with reductions of intracellular K+ disrupting glycolysis and triggering energy stress pathways, while K+ re-addition promptly restores glycolysis. Activation of the KV1.3 channel lowers cellular K+ content and glycolytic activity.
Article
Chemistry, Multidisciplinary
Sandra Burgstaller, Helmut Bischof, Thomas Rauter, Tony Schmidt, Rainer Schindl, Silke Patz, Bernhard Groschup, Severin Filser, Lucas van den Boom, Philipp Sasse, Robert Lukowski, Nikolaus Plesnila, Wolfgang F. Graier, Roland Malli
Summary: The study presents a novel approach to immobilize ion biosensors on cell surfaces for imaging ion dynamics, successfully enabling effective measurements of ion concentrations. Results suggest that immobilizing different biosensors on extracellular surfaces can quantitatively visualize microenvironmental transport and signaling processes in cell culture models.
Article
Materials Science, Multidisciplinary
Tony Schmidt, Marie Jakesova, Vedran Derek, Karin Kornmueller, Oleksandra Tiapko, Helmut Bischof, Sandra Burgstaller, Linda Waldherr, Marta Nowakowska, Christian Baumgartner, Muammer Ucal, Gerd Leitinger, Susanne Scheruebel, Silke Patz, Roland Malli, Eric Daniel Glowacki, Theresa Rienmueller, Rainer Schindl
Summary: This research evaluates the performance of organic electrolytic photocapacitor (OEPC) optoelectronic stimulators on single mammalian cells and neurons, demonstrating the ability to manipulate channel conductivity and trigger action potentials with millisecond precision. This opens up possibilities for novel in vitro electrophysiology protocols and potential in vivo applications.
ADVANCED MATERIALS TECHNOLOGIES
(2022)
Article
Biology
David Skrabak, Helmut Bischof, Thomas Pham, Peter Ruth, Rebekka Ehinger, Lucas Matt, Robert Lukowski
Summary: Mutations of the Na+-activated K+ channel Slack are associated with severe epilepsy syndromes in infants. Our study showed that knockout of the Slack gene in mice increased the severity of kainic acid-induced seizures and led to enhanced sensitivity to kainic acid and altered ion homeostasis in hippocampal slices and cultured neurons. This suggests that Slack plays a crucial role in regulating neuronal excitability and limiting seizure severity.
COMMUNICATIONS BIOLOGY
(2023)
Article
Biochemical Research Methods
Helmut Bischof, Sandra Burgstaller, Wolfgang F. Graier, Robert Lukowski, Roland Malli
Summary: Monitoring the metabolic activities of HEK293 cells using genetically encoded biosensors revealed a strong dependency of cellular ATP homeostasis on high intracellular K+ levels. The study highlights the importance of potassium sensitivity in cellular metabolism regulation.
Article
Biochemical Research Methods
Sandra Burgstaller, Helmut Bischof, Robert Lukowski, Wolfgang F. Graier, Roland Malli
Summary: This study demonstrated the dependence of hexokinase 2 activity on intracellular potassium ion concentration, and analyzed the K+ dependency of cell metabolism in cell populations using an extracellular flux analyzer.
Correction
Biochemistry & Molecular Biology
Siew Chin Chan, Chih-Wei Tung, Chia-Wei Lin, Yun-Shiuan Tung, Po-Min Wu, Pei-Hsun Cheng, Chuan-Mu Chen, Shang-Hsun Yang
FREE RADICAL BIOLOGY AND MEDICINE
(2024)
Article
Biochemistry & Molecular Biology
Suyuan Liu, Meiling Tan, Jiangxue Cai, Chenxuan Li, Miaoxin Yang, Xiaoxiao Sun, Bin He
Summary: This study reveals that the antibiotic doxycycline effectively inhibits NLRP3 inflammasome activation by targeting mitochondrial translation and mtDNA synthesis, offering potential for the treatment of NLRP3-related diseases.
FREE RADICAL BIOLOGY AND MEDICINE
(2024)
Article
Biochemistry & Molecular Biology
Hao Liu, Nana Li, Ge Kuang, Xia Gong, Ting Wang, Jun Hu, Hui Du, Minxuan Zhong, Jiashi Guo, Yao Xie, Yang Xiang, Shengwang Wu, Yiling Yuan, Xinru Yin, Jingyuan Wan, Ke Li
Summary: Protectin D1 (PTD1) improves hepatic steatosis, inflammation and fibrosis in a NASH mouse model by inhibiting the activation of TLR4 downstream signaling pathway, possibly through upregulation of IRAK-M expression, suggesting a potential new treatment for NASH.
FREE RADICAL BIOLOGY AND MEDICINE
(2024)