BioDKG–DDI: predicting drug–drug interactions based on drug knowledge graph fusing biochemical information

Mol2Context-vec: learning molecular representation from context awareness for drug discovery

(2021) Qiujie Lv et al.   BRIEFINGS IN BIOINFORMATICS

A network embedding framework based on integrating multiplex network for drug combination prediction

(2021) Liang Yu et al.   BRIEFINGS IN BIOINFORMATICS

DPDDI: a deep predictor for drug-drug interactions

(2020) Yue-Hua Feng et al.   BMC BIOINFORMATICS

SFLLN: A sparse feature learning ensemble method with linear neighborhood regularization for predicting drug–drug interactions

(2019) Wen Zhang et al.   INFORMATION SCIENCES

Modeling of Flocculation and Sedimentation Using Population Balance Equation

(2019) Zhipeng Shi et al.   Journal of Chemistry

Drug-Drug Interaction Predicting by Neural Network Using Integrated Similarity

(2019) Narjes Rohani et al.   Scientific Reports

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings

(2019) Remzi Celebi et al.   BMC BIOINFORMATICS

Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization

(2018) Hui Yu et al.   BMC Systems Biology

Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition

(2018) Sabrina Jaeger et al.   Journal of Chemical Information and Modeling

TMFUF: a triple matrix factorization-based unified framework for predicting comprehensive drug-drug interactions of new drugs

(2018) Jian-Yu Shi et al.   BMC BIOINFORMATICS

PubChem 2019 update: improved access to chemical data

(2018) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information

(2017) Leyi Wei et al.   INFORMATION SCIENCES

Identification of drug-target interactions via multiple information integration

(2017) Yijie Ding et al.   INFORMATION SCIENCES

Computational prediction of drug-drug interactions based on drugs functional similarities

(2017) Reza Ferdousi et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Convolutional Embedding of Attributed Molecular Graphs for Physical Property Prediction

(2017) Connor W. Coley et al.   Journal of Chemical Information and Modeling

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases

(2017) Kalpana Raja et al.   Scientific Reports

A probabilistic approach for collective similarity-based drug–drug interaction prediction

(2016) Dhanya Sridhar et al.   BIOINFORMATICS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Large-scale exploration and analysis of drug combinations

(2015) Peng Li et al.   BIOINFORMATICS

The SIDER database of drugs and side effects

(2015) Michael Kuhn et al.   NUCLEIC ACIDS RESEARCH

A novel feature-based approach to extract drug-drug interactions from biomedical text

(2014) Q.-C. Bui et al.   BIOINFORMATICS

Machine learning-based prediction of drug–drug interactions by integrating drug phenotypic, therapeutic, chemical, and genomic properties

(2014) Feixiong Cheng et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Similarity-based modeling in large-scale prediction of drug-drug interactions

(2014) Santiago Vilar et al.   Nature Protocols

Hospital admissions/visits associated with drug-drug interactions: a systematic review and meta-analysis

(2014) Supinya Dechanont et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

(2014) Toshiaki Katayama et al.   Journal of Biomedical Semantics

Drug–Drug Interaction Studies: Regulatory Guidance and An Industry Perspective

(2013) Thomayant Prueksaritanont et al.   AAPS Journal

DrugBank 4.0: shedding new light on drug metabolism

(2013) Vivian Law et al.   NUCLEIC ACIDS RESEARCH

Detection of Drug-Drug Interactions by Modeling Interaction Profile Fingerprints

(2013) Santiago Vilar et al.   PLoS One

Informatics confronts drug–drug interactions

(2013) Bethany Percha et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Drug—drug interaction through molecular structure similarity analysis

(2012) Santiago Vilar et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

INDI: a computational framework for inferring drug interactions and their associated recommendations

(2012) Assaf Gottlieb et al.   Molecular Systems Biology

Data-Driven Prediction of Drug Effects and Interactions

(2012) N. P. Tatonetti et al.   Science Translational Medicine

Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents

(2010) Isabel Segura-Bedmar et al.   BMC BIOINFORMATICS