Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments

Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

(2015) Ruth Davidson et al.   BMC GENOMICS

Evidence for the involvement of two heterodisulfide reductases in the energy-conserving system ofMethanomassiliicoccus luminyensis

(2015) Lena Kröninger et al.   FEBS Journal

Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment

(2015) Nicholas D Youngblut et al.   ISME Journal

Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments

(2015) Suzanna Bräuer et al.   MICROBIOLOGY-SGM

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Comparative genomics of threeMethanocellalesstrains reveal novel taxonomic and metabolic features

(2015) Zhe Lyu et al.   Environmental Microbiology Reports

ATP synthases from archaea: The beauty of a molecular motor

(2014) Gerhard Grüber et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Genetic resources for methane production from biomass described with the Gene Ontology

(2014) Endang Purwantini et al.   Frontiers in Microbiology

Evolution of Na+and H+bioenergetics in methanogenic archaea

(2013) Katharina Schlegel et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

VhuD Facilitates Electron Flow from H2 or Formate to Heterodisulfide Reductase in Methanococcus maripaludis

(2013) K. C. Costa et al.   JOURNAL OF BACTERIOLOGY

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Divergent Life History Strategies in Marine Alphaproteobacteria

(2013) H. Luo et al.   mBio

Low-Temperature (10°C) Anaerobic Digestion of Dilute Dairy Wastewater in an EGSB Bioreactor: Microbial Community Structure, Population Dynamics, and Kinetics of Methanogenic Populations

(2013) Katarzyna Bialek et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

(2012) Yuri I Wolf et al.   Biology Direct

The impact of HGT on phylogenomic reconstruction methods

(2012) P. Lapierre et al.   BRIEFINGS IN BIOINFORMATICS

Functional responses of methanogenic archaea to syntrophic growth

(2012) Christopher B Walker et al.   ISME Journal

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Promiscuous archaeal ATP synthase concurrently coupled to Na+ and H+ translocation

(2012) K. Schlegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis

(2012) T. J. Lie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations

(2012) Ming-Chun Lee et al.   PLoS Genetics

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Genome-wide evidence for positive selection and recombination in Actinobacillus pleuropneumoniae

(2011) Zhuofei Xu et al.   BMC EVOLUTIONARY BIOLOGY

Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass

(2011) James G Ferry   CURRENT OPINION IN BIOTECHNOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Proteomic Analysis of Methanothermobacter themautotrophicus ΔH in Pure Culture and in Co-Culture with a Butyrate-Oxidizing Bacterium

(2011) Miho Enoki et al.   PLoS One

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

(2010) M. Csuos   BIOINFORMATICS

Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog

(2010) S. L. Brauer et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella

(2010) Tiegang Xu et al.   NUCLEIC ACIDS RESEARCH

Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase

(2010) K. C. Costa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland

(2009) H. Cadillo-Quiroz et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge

(2009) Y. Yashiro et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Methanogenesis byMethanosarcina acetivoransinvolves two structurally and functionally distinct classes of heterodisulfide reductase

(2009) Nicole R. Buan et al.   MOLECULAR MICROBIOLOGY

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

(2009) Iain Anderson et al.   PLoS One

Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri

(2009) G. Kulkarni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flagellum Mediates Symbiosis

(2009) T. Shimoyama et al.   SCIENCE

Complete genome sequence of Methanocorpusculum labreanum type strain Z

(2009) Iain J. Anderson et al.   Standards in Genomic Sciences

Methanogenesis in Marine Sediments

(2008) James G. Ferry et al.   Annals of the New York Academy of Sciences

Characterization of the Archaeal Community in a Minerotrophic Fen and Terminal Restriction Fragment Length Polymorphism-Directed Isolation of a Novel Hydrogenotrophic Methanogen

(2008) H. Cadillo-Quiroz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanolinea tarda gen. nov., sp. nov., a methane-producing archaeon isolated from a methanogenic digester sludge

(2008) H. Imachi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.

(2008) S. Sakai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

(2008) Agnès Mihajlovski et al.   RESEARCH IN MICROBIOLOGY

Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli

(2007) Souichiro Kato et al.   ENVIRONMENTAL MICROBIOLOGY