Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts

(2015) Chao-Li Huang et al.   BMC GENOMICS

Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection

(2015) Sophie E. Darch et al.   Scientific Reports

Thriving in the Cold: Glacial Expansion and Post-Glacial Contraction of a Temperate Terrestrial Salamander (Plethodon serratus)

(2015) Catherine E. Newman et al.   PLoS One

Population Genetic Analysis of Streptomyces albidoflavus Reveals Habitat Barriers to Homologous Recombination in the Diversification of Streptomycetes

(2014) Kun Cheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin

(2014) James R Doroghazi et al.   BMC GENOMICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diverse cryptic refuges for life during glaciation

(2014) S. B. Pointing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

(2014) N. Ziemert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes

(2013) James R Doroghazi et al.   BMC GENOMICS

To Tree or Not to Tree? Genome-Wide Quantification of Recombination and Reticulate Evolution during the Diversification of Strict Intracellular Bacteria

(2013) Antonio Hernández-López et al.   Genome Biology and Evolution

Molecular evidence for an active endogenous microbiome beneath glacial ice

(2013) Trinity L Hamilton et al.   ISME Journal

Multilocus Sequence Analysis of Nectar Pseudomonads Reveals High Genetic Diversity and Contrasting Recombination Patterns

(2013) Sergio Álvarez-Pérez et al.   PLoS One

Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov.

(2013) Xiaoying Rong et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates

(2012) Marek Stibal et al.   EXTREMOPHILES

Role of Homologous Recombination in Adaptive Diversification of Extraintestinal Escherichia coli

(2012) Sandip Paul et al.   JOURNAL OF BACTERIOLOGY

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

The Chimeric Genome of Sphaerochaeta: Nonspiral Spirochetes That Break with the Prevalent Dogma in Spirochete Biology

(2012) A. Caro-Quintero et al.   mBio

Dispersal limitation and the assembly of soilActinobacteriacommunities in a long-term chronosequence

(2012) Sarah D. Eisenlord et al.   Ecology and Evolution

Patterns of Gene Flow Define Species of Thermophilic Archaea

(2012) Hinsby Cadillo-Quiroz et al.   PLOS BIOLOGY

The genetic integrity of bacterial species: the core genome and the accessory genome, two different stories

(2012) Bo Segerman   Frontiers in Cellular and Infection Microbiology

Granaticins and their biosynthetic gene cluster from Streptomyces vietnamensis: evidence of horizontal gene transfer

(2011) Ming-Rong Deng et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Phylogenetic study of the species within the family Streptomycetaceae

(2011) D. P. Labeda et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diversity, Abundance, and Potential Activity of Nitrifying and Nitrate-Reducing Microbial Assemblages in a Subglacial Ecosystem

(2011) Eric S. Boyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial species may exist, metagenomics reveal

(2011) Alejandro Caro-Quintero et al.   ENVIRONMENTAL MICROBIOLOGY

A Model for the Effect of Homologous Recombination on Microbial Diversification

(2011) James R. Doroghazi et al.   Genome Biology and Evolution

Influence of Deglaciation on Microbial Communities in Marine Sediments Off the Coast of Svalbard, Arctic Circle

(2011) Soo-Je Park et al.   MICROBIAL ECOLOGY

Sequence-Based Analysis of Secondary-Metabolite Biosynthesis in Marine Actinobacteria

(2010) E. A. Gontang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Widespread homologous recombination within and between Streptomyces species

(2010) James R Doroghazi et al.   ISME Journal

Giant linear plasmids in Streptomyces: a treasure trove of antibiotic biosynthetic clusters

(2010) Haruyasu Kinashi   JOURNAL OF ANTIBIOTICS

Was it an explosion? Using population genetics to explore the dynamics of a recent radiation within Protea (Proteaceae L.)

(2010) RACHEL PRUNIER et al.   MOLECULAR ECOLOGY

The impact of Pleistocene glaciation across the range of a widespread European coastal species

(2010) ANTHONY B. WILSON et al.   MOLECULAR ECOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Glacial Refugia in Pathogens: European Genetic Structure of Anther Smut Pathogens on Silene latifolia and Silene dioica

(2010) Elodie Vercken et al.   PLoS Pathogens

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

(2009) O. Zhaxybayeva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography of the Sulfolobus islandicus pan-genome

(2009) M. L. Reno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

(2009) M. Boyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

(2009) C. Fraser et al.   SCIENCE

Multilocus Sequence Typing of Oenococcus oeni: Detection of Two Subpopulations Shaped by Intergenic Recombination

(2008) E. Bilhere et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The reality and importance of founder speciation in evolution

(2008) Alan R. Templeton   BIOESSAYS

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

(2008) Bastien Boussau et al.   BMC EVOLUTIONARY BIOLOGY

A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics

(2008) Y. Guo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergence of Campylobacter Species: Implications for Bacterial Evolution

(2008) S. K. Sheppard et al.   SCIENCE