Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments

Anthrax Pathogenesis

(2015) Mahtab Moayeri et al.   Annual Review of Microbiology

Different management practices are associated with mesophilic and thermophilic spore levels in bulk tank raw milk

(2015) R.A. Miller et al.   JOURNAL OF DAIRY SCIENCE

Spore populations among bulk tank raw milk and dairy powders are significantly different

(2015) Rachel A. Miller et al.   JOURNAL OF DAIRY SCIENCE

Various Enterotoxin and Other Virulence Factor Genes Widespread Among Bacillus cereus and Bacillus thuringiensis Strains

(2015) Min-Ju Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Genomic insights into the taxonomic status of the Bacillus cereus group

(2015) Yang Liu et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evaluation of dairy powder products implicates thermophilic sporeformers as the primary organisms of interest

(2014) M.J. Watterson et al.   JOURNAL OF DAIRY SCIENCE

Bacillus bingmayongensis sp. nov., isolated from the pit soil of Emperor Qin’s Terra-cotta warriors in China

(2013) Bo Liu et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Diversity ofBacillus cereusgroup strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles

(2013) Siele Ceuppens et al.   FEMS MICROBIOLOGY ECOLOGY

Characterization of aerobic spore-forming bacteria associated with industrial dairy processing environments and product spoilage

(2013) Genia Lücking et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

(2013) Shea N. Gardner et al.   PLoS One

Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations

(2013) Guillermo Jiménez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing

(2012) Reid A. Ivy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining bacterial species in the genomic era: insights from the genus Acinetobacter

(2012) Jacqueline Z-M Chan et al.   BMC MICROBIOLOGY

Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus Group occasionally associated with food poisoning

(2012) M.-H. Guinebretiere et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacillus gaemokensis sp. nov., isolated from foreshore tidal flat sediment from the Yellow Sea

(2011) Min-Young Jung et al.   JOURNAL OF MICROBIOLOGY

Bacillus manliponensis sp. nov., a new member of the Bacillus cereus group isolated from foreshore tidal flat sediment

(2011) Min Young Jung et al.   JOURNAL OF MICROBIOLOGY

Ability of Bacillus cereus Group Strains To Cause Food Poisoning Varies According to Phylogenetic Affiliation (Groups I to VII) Rather than Species Affiliation

(2010) M.-H. Guinebretiere et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

(2008) Samuel V. Angiuoli et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Ecological diversification in the Bacillus cereus Group

(2007) Marie-Hélène Guinebretière et al.   ENVIRONMENTAL MICROBIOLOGY